SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21223

Length: 702 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21223

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase [Beta vulgaris]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	casein kinase i isoform delta-like protein	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Domain of unknown function DUF71, ATP-binding domain	IPR002761	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
43	66		33		0.997452
46	66		33		0.997452
47		66		33	0.997452
48			33	66	0.997452
49	33	66			0.997452
50		33		66	0.997452
51		33		66	0.997452
54	66		33		0.997452
55			33	66	0.997452
58	33			66	0.997452
59			33	66	0.997452
63	33	66			0.997452
66	66	33			0.997452
68		33	66		0.997452
69	33			66	0.997452
549		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain