SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21221

Length: 420 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene21221
AACATCGTGCTGAAAGCATCGCAGAGGAAAATAATATCAGGCGTCAACATTGTAGACAATATGTTCAGTGGCTCTCGGAAGGGCGTGGACATTGTTCAGTTGGTGGGTAGATTTGAATCGATTGATAAGACGGTTGTTGACAAGAACAATGCGCTTGGAATGAGGCTTAAATCAACGGTTGCTCGAGGCACAGTGAAGGGCAATGGAACCACATGGGCCATAGATTTTAATCCCTTCCTGCTCTTCCCAAACCTTGTTCAGAATGTTCAGTATTCTTTCTATACATCTGATGCTTCGTTTCCCAGGCATGCTCTCAGAAATGTGTCTCACAACAAAGTGGTGATCGAAGCGGATACCCAAGTATCTGCAACAGTCGCAGTGCTGGTAGATCAGAGTGCCACTTTTGTTCAAGGCGATGGG

Ace file of the UniGene sp_v2.0_unigene21221

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase QRT3 [Arabidopsis thaliana] ref\|NP_001078410.1\| Polygalacturonase QRT3 [Arabidopsis thaliana] sp\|O49432.1\|QRT3_ARATH RecName: Full=Polygalacturonase QRT3; Short=AtQRT3; Short=PG QRT3; AltName: Full=Pectinase QRT3; AltName: Full=Protein Q	-	-	3.0e-31	55%
FL-Next	sp=Polygalacturonase QRT3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Blast2go	protein	-	-	6.5861e-44	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	6.5861e-44	72%

Source	KEGGs	Term	e value	Identity
Blast2go	Pentose and glucuronate interconversions	00040	6.5861e-44	72%
Blast2go	Starch and sucrose metabolism	00500	6.5861e-44	72%
Blast2go	Metabolic pathways	01100	6.5861e-44	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	6.5861e-44	72%
Blast2go	pollen exine formation	GO:0010584	Biological Process	6.5861e-44	72%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	6.5861e-44	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Parallel beta-helix repeat	IPR006626	-	0.0	-
Sma3	Pectin lyase fold	IPR012334	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: O49432

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 140 - 481

Fln protein: NIVLKASQRKIISGVNIVDNMFSGSRKGVDIVQLVGRFESIDKTVVDKNNALGMRLKSTVARGTVKGNGTTWAIDFNPFLLFPNLVQNVQYSFYTSDASFPRHALRNVSHNKVVIEADTQVSATVAVLVDQSATFVQGDG

Protein Length: 141

Fln nts: AACATCGTGCTGAAAGCATCGCAGAGGAAAATAATATCAGGCGTCAACATTGTAGACAATATGTTCAGTGGCTCTCGGAAGGGCGTGGACATTGTTCAGTTGGTGGGTAGATTTGAATCGATTGATAAGACGGTTGTTGACAAGAACAATGCGCTTGGAATGAGGCTTAAATCAACGGTTGCTCGAGGCACAGTGAAGGGCAATGGAACCACATGGGCCATAGATTTTAATCCCTTCCTGCTCTTCCCAAACCTTGTTCAGAATGTTCAGTATTCTTTCTATACATCTGATGCTTCGTTTCCCAGGCATGCTCTCAGAAATGTGTCTCACAACAAAGTGGTGATCGAAGCGGATACCCAAGTATCTGCAACAGTCGCAGTGCTGGTAGATCAGAGTGCCACTTTTGTTCAAGGCGATGGG

Fln Alignment:

Contig21221___VLKASQRKIISGVNIVDNMFSGSRKGVDIVQLVGR---FESIDKTVVDKNNALGMRLKSTVARGTVKGNGTTWAIDFNPFLLFPNLVQNVQYSFYTSDAS-FPRHALRNVSHNKVVIEADTQVSATVAVLVDQ
O49432_______________ILLKSIAGYIRGVSIVDNMFSGSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain