SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21174

Length: 1337 nt

Origin of reads: Inia v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21174

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	early nodulin-like protein 9 [Arabidopsis thaliana] dbj\|BAB01165.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAP88350.1\| At3g20570 [Arabidopsis thaliana] dbj\|BAF00275.1\| predicted GPI-anchored protein [Arabidopsis thaliana] gb\|AEE76399.1\| early n	-	-	2.0e-27	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	early nodulin 55-2	-	-	7.14261e-38	67%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSL6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 56 aas, putative chimeric sequence, your sequence is shorter than subject: 144 - 210

Fln protein: MASLYAGALSFLMVLQAVAAYHQFFVGGGNGWVPPSGTQESYNQWAGRNRFQVGDLLVFKYNPNEDSVLQVNSQDYEACKTTNPVAPFKDGNTVFKFPKHGPFYFISGNATNCQKGEKLVIVVMAPETLSALAALRPPLPPQP*

Protein Length: 145

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTTTTCTCTTGGCGCTTTCGTCTTCTCTTCTTCTTCTTTTCTTTTCTGTGTGTCATCTGGTATAGCGCTCGAGCTTGCAGGCGAATTATCA_-_ATGGCGTCGCTTTACGCTGGGGCACTCAGTTTTCTAATGGTTTTACAGGCTGTCGCGGCTTATCATCAGTTCTTTGTAGGAGGCGGAAACGGGTGGGTTCCTCCCTCCGGAACTCAGGAGTCGTACAACCAGTGGGCCGGCCGAAATCGCTTCCAAGTCGGGGATCTACTCGTGTTCAAGTACAACCCAAATGAGGACTCCGTGCTGCAAGTGAATTCGCAAGACTACGAAGCCTGCAAGACAACGAACCCCGTTGCCCCCTTCAAAGACGGGAACACGGTGTTCAAGTTTCCTAAACACGGCCCCTTCTACTTCATCAGCGGCAACGCCACCAATTGCCAGAAGGGTGAAAAGCTCGTCATTGTGGTCATGGCCCCCGAAACACTATCCGCGTTGGCAGCCCTTCGCCCGCCCCTGCCTCCACAGCCGTAG___CTCCGACCCCGGTTGCAGTTGCCCCATCCGTGGCCACTCCATCGCCTGCACCATCCGCAGCCACTCCAACGCCCACACCGTCAAGAGCCACTCCGGCCCCTGCCCCTTCCAAGGCCGCTCCGTCCCCTGCACCGTCTGTGGCTCCTCCCACCCCTGTGCCAGCGCCGGCCGCCTCTGTACCCTCTCCGAGCCCCGTTCTGTCCCCGCCATCCGTAGCCCCGTCCCCGTCTGCGCCGGTCGTTGCTTCTCCCCAGCCATCGCAGGAGAACGGAGGGGAGCCCTCACTCCCGCCCGCGGCCTCCGCAACTGAATCTACCTCTCTCGCTGCCTCGTCTTCCTCTGTTTCTGCTGCTGCTACCGCAGTGGCCCTGCTCATGTGGGGCCTGGCCATGGCGACCTTCTAGACCTATATATACTATACCATCTGCGTGACCTGTATAGAATTATGTTATTAGCCCGCTAGAGCACAGAGCATTATTTGTGCTAGTCTTATATTTTTTTATTTATTCAGAGACCTCTGCATATCCGTATTCATTCATGCCAGCGATTTCAATAATGTGTTTCTGTATCGACGAATCGAATAACAGGCGAATCCTTGGATCCTTTTTCTCAGTCTGTGTATTCTTCTTTGGTAAAAAACCACTGCTTTATATGTTTTTCCCAAAGTCCAAAGTTGGTTCTTCCTCTCGGGACTTTCGGGCGTATTCCAGCAGTTGGCAGTCAGACATAAATGAGAATTAGACCGCGTTTCTGATTAATGATTATAATTTAATTCATAAACCTGTTTTTCT

Fln Alignment:

Contig21174___AGELSMA-SLYAGALSFLMVLQAVAAYHQFFVGGGNGWVPPSGTQ-ESYNQWAGRNRFQVGDLLVFKYNPNEDSVLQVNSQDYEACKTTNPVAPFKDGNTVFKFPKHGPFYFISGNATNCQKGEKLVIVVM
A9NSL6_______________SGRLSSGEALCVLALCFLLGLQ-MAAGSDFIVGGNNGWVVPTGSERESFNQWAERLRFHVGDTLLFKYSANQDSVLLVSRDAFQSCNTTSPAASYNDGNTAFKFPRPGPYYFISGAQGHCEKGQKLVVVVM

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
152	15			84	0.999986
154		15		84	0.999986
155	84	15			0.999986
158		15		76	0.999983
164	15			84	0.999986
167	76			7	0.999983
1330	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
49	61	TCT TCT TCT TCT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain