SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21126

Length: 1276 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene21126 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gb\|ABE65859.1\| hypothetical protein At2g24320 [Arabidopsis thaliana] gb\|AEC07562.1\| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	-	-	69%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	73%
Blast2go	protein	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	Thionin	IPR001010	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Phospholipase/carboxylesterase/thioesterase	IPR003140	-	-
Sma3	Sulphate transporter	IPR011547	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9IMH2

Fln msg:

Fln protein: MGNVTSSVAARFAFFPPDPPSYKLCIDGGKLYMTNVPRDKYKDVQLVETKEGNRIVTMYLRHPHARFTLLYSHGNAADLGHMHDLLLELRAHLRVNVMSYDYSGYGASFGKATEFNTYADIEAVYDYLRRDYGIRQEDLILYGQSVGSGPTLHLASRLPRLRAVVLHSAILSGIRVLYPVKMTFCFDIFKNIDKIQLVKCPVLVMHGTNDEIVDWSHGKRLWELCKQKYEPLWIKGGGHCNLELYPEYINHLRKFIHAMKTFSAANNFKQVQQMHRQPQQKC*

Protein Length: 284

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGTCTGTCTCGCAGAACAATTTAGCTACCAGAGGTTGCCTCTGCGACGAATAACAGCTGAAAAATAAATTGTGTAGAGATATCGAAGTTTGAAGGTGGAAATTCCAATTGGGTAGAGAAATTGTGATGAAAATTCCAATTGGGTAGAGAAATTGTGGTCAAAATTCCAATTTGGTAGAGAAATTGTTGAATCAAAGAGGCAGAAACCACCATATTCTGGGTGAAACTTAGATCAAAAGTCTTAGGACATGTCACACTTTTGGGATTCTGAGATAAAGCCTTAACAGGATTGCGCTGAGAATCGAACCTGAGCTGGTTGCCTATT_-_ATGGGCAATGTTACTTCCAGTGTGGCTGCAAGATTTGCGTTTTTCCCTCCAGATCCACCAAGCTATAAGCTGTGTATAGATGGGGGCAAATTGTACATGACGAATGTTCCCCGTGATAAATACAAGGATGTTCAGTTGGTCGAAACGAAGGAAGGCAACAGAATAGTTACCATGTATCTGCGCCATCCACATGCTCGCTTCACGTTGCTTTATTCCCATGGCAACGCCGCCGATTTGGGTCACATGCATGACCTACTTCTGGAACTCAGAGCGCACCTGCGGGTCAATGTGATGAGTTATGATTACTCGGGATATGGAGCTTCTTTTGGGAAAGCAACAGAGTTCAACACATATGCTGATATAGAAGCAGTCTACGATTATCTAAGAAGAGACTATGGAATAAGGCAAGAAGATTTGATTTTGTACGGACAGTCTGTTGGAAGTGGGCCTACATTACACTTGGCTTCCCGTTTACCAAGGTTAAGAGCTGTTGTTCTTCACAGTGCTATTCTCTCAGGCATTCGTGTTCTCTACCCTGTAAAAATGACGTTTTGCTTTGATATCTTCAAGAATATTGACAAGATTCAACTCGTCAAATGCCCAGTACTTGTCATGCATGGAACCAACGATGAGATAGTTGACTGGTCCCATGGAAAGCGACTGTGGGAGCTATGCAAGCAAAAATACGAACCTCTATGGATCAAGGGTGGTGGACACTGCAACTTGGAGCTCTACCCAGAGTATATCAATCACTTGCGCAAATTTATTCATGCAATGAAAACGTTCTCAGCAGCCAATAACTTCAAACAAGTACAACAAATGCATCGACAACCACAACAAAAGTGCTAA___TGATTTGGTTGATATGGCTGGCTTGCCCTTCCCTGTAAATTAATTTGATTGCCTTGTTAAAGCAAAAGATATTGATCA

Fln Alignment:

Contig21126___MGNVTSSVXXXXXXXXXXXPSYKLCIDG-GKLYMTNVPRDKYKDVQLVETKEGNRIVTMYLRHPHARFTLLYSHGNAADLGHMHDLLLELRAHLRVNVMSYDYSGYGASFGKATEFNTYADIEAVYDYLRRDYGIRQEDLILYGQSVGSGPTLHLASRLPRLRAVVLHSAILSGIRVLYPVKMTFCFDIFKNIDKIQLVKCPVLVMHGTNDEIVDWSHGKRLWELCKQKYEPLWIKGGGHCNLELYPEYINHLRKFIHAMKTFSAANNFKQVQQ
B9IMH2_______________MGNVTSSVAAKFAFFPPDPPTYDVFRESDGRLVLPGVTADKNMEVHLLETKPGNKIVATFWKHPFARFTVLYSHGNAADLGQMHELFIELRAHLRVNIMSYDYSGYGASSGKPSEFNTYYDIEAVYNCLKKDYGIKQEDLILYGQSVGSGPTLHLASRLQKLRGVVLHSAILSGIRVLCPVKMTFWFDIYKNIDKIRLVSCPVLVIHGTNDDIVDLSHGKRLWELAKEKYDPLWVKGGGHCNLETYPEYIKHLRKFINAMEKISIVKPTKQLTQ

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
223		66		33	0.997452
236			66	33	0.997452
238	33			66	0.997452
239			33	66	0.997452
240		66		33	0.997452
242	33			66	0.997452
245			33	66	0.997452
246		33		66	0.997452
247		33		66	0.997452
248	33			66	0.997452
249	33			66	0.997452
251		66	33		0.997452
253		33		66	0.997452
254	33		66		0.997452
258		66		33	0.997452
259	66		33		0.997452
547	33			66	0.997452
548	33	66			0.997452
582	33		66		1.0
635		85		14	0.993533
645		83		16	0.994512
681		40		60	1.0
693		60	40		1.0
717	80		20		0.995493
898	14		85		0.993533
902	85			14	0.993533
965	87		12		0.992554
1017	14			85	0.993533
1019	28		71		1.0
1021	85			14	0.993533
1023		14		85	0.993533
1024			14	85	0.993533
1025	14			85	0.993533
1026		14		85	0.993533
1064		20	80		0.995493
1075		16		83	0.994512
1105	80			20	0.995493
1174		33		66	0.997452
1175		33		66	0.997452
1177		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain