SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21059

Length: 395 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene21059
CGTCGTGACCTTGGCTGTCACTCAGCATGCATCTTACGTGATCTGCTTCATGCTATAGAATACCTACACACTGAAGGAAAAATACACAGAGACATCAAAGCGGCTAACATCTTGCTCACGGCAAATGGTGATGTTAAGGTTGCAGATTTTGGCGTCTCTGCCCAGCTAACACGGACTGTTTCGAAGCGAAAGACATTTGTTGGTACTCCATTTTGGATGGCTCCAGAGGTTATTCAGAACTCAGATGGATATAATGAAAAGGCAGATATTTGGTCATTGGGCATTACCGCTATCGAGATGGCTAAGGGAGAGCCTCCTTTTGCAGATCTTCATCCAATGAGAGTTCTATTTCTGATTCCCAAAAATAACCCCCCTCAGCTCGATGACCATTTTTC

Ace file of the UniGene sp_v2.0_unigene21059

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative MAP4 kinase [Oryza sativa Japonica Group]	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	atp binding	-	-	96%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Ribosome maturation factor RimP	IPR003728	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015748	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR19

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 131 - 902

Fln protein: RRDLGCHSACILRDLLHAIEYLHTEGKIHRDIKAANILLTANGDVKVADFGVSAQLTRTVSKRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAKGEPPFADLHPMRVLFLIPKNNPPQLDDHF

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCATGCATCTTACGTGATCTGCTTCATGCTATAGAATACCTACACACTGAAGGAAAAATACACAGAGACATCAAAGCGGCTAACATCTTGCTCACGGCAAATGGTGATGTTAAGGTTGCAGATTTTGGCGTCTCTGCCCAGCTAACACGGACTGTTTCGAAGCGAAAGACATTTGTTGGTACTCCATTTTGGATGGCTCCAGAGGTTATTCAGAACTCAGATGGATATAATGAAAAGGCAGATATTTGGTCATTGGGCATTACCGCTATCGAGATGGCTAAGGGAGAGCCTCCTTTTGCAGATCTTCATCCAATGAGAGTTCTATTTCTGATTCCCAAAAATAACCCCCCTCAGCTCGATGACCATTTTTC

Fln Alignment:

Contig21059___RDLLHAIEYLHTEGKIHRDIKAANILLTANGDVKVADFGVSAQLTRTVSKRKTFVGTPFWMAPEVI-QNSDGYNEKADIWSLGITAIEMAKGEPPFADLHPMRVLFLIPKNNPPQLDD
B8LR19_______________RQILSGLAYLHSMNTVHRDIKGGNILVDTYGRVKLADFGMAKHINGPATP-LSLKGSPYWMAPEVLMQKNTGHDLAVDIWSLGCTVIEMATGKPPWSEYEGAAAMFKVFKSEVPPIPD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
295		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain