SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21014

Length: 353 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene21014
CGTCGTGACCTTGGCTGTCACTCAGTACTTACAAGCTCGGGAATTATAGAGGCGTCTATTTAGCAGCAAACAGGTCTTAACCGACAACAGTCTAGAGCACTATTCTGCTCGCATGCCTTTGACCAGAGTTGTCCTGTCACGGGATTTGAACAACTGGTTGAACATTTTTTGGATTTCTGTGATGGATTGCATAAGATCATCGGAGCGGCTATTCGTGGAAAAGAGTCTGAGTTTTGGAAAAGACGGCTAGACAAAATCAGAAGAATACTTCCCACGGATATTCATAGCAAGCTTAAAATTAGCTATGATGGTCTGGATGAAGAGGAGCAGGAGATCTTTTTAGACTTCGCCTT

Ace file of the UniGene sp_v2.0_unigene21014

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO	-	-	1.0e-23	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	nbs-lrr protein g6229	-	-	1.34943e-30	67%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 593 aas, your sequence is shorter than subject: 117 - 1071

Fln protein: RRDLGCHSVLTSSGIIEASI*QQTGLNRQQSRALFCSHAFDQSCPVTGFEQLVEHFLDFCDGLHKIIGAAIRGKESEFWKRRLDKIRRILPTDIHSKLKISYDGLDEEEQEIFLDFA

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTACTTACAAGCTCGGGAATTATAGAGGCGTCTATTTAGCAGCAAACAGGTCTTAACCGACAACAGTCTAGAGCACTATTCTGCTCGCATGCCTTTGACCAGAGTTGTCCTGTCACGGGATTTGAACAACTGGTTGAACATTTTTTGGATTTCTGTGATGGATTGCATAAGATCATCGGAGCGGCTATTCGTGGAAAAGAGTCTGAGTTTTGGAAAAGACGGCTAGACAAAATCAGAAGAATACTTCCCACGGATATTCATAGCAAGCTTAAAATTAGCTATGATGGTCTGGATGAAGAGGAGCAGGAGATCTTTTTAGACTTCGCCTT

Fln Alignment:

Contig21014___VLTSSGIIEASI*QQTGLNRQQSRALFCSHAFDQSCPVTGFEQLVEHFLDFCDGLH---KIIGAAIRGKESEFWKRRLDKIRRILPTDIHSKLKISYDGLDEEEQEIFLDFA
C0PQE2_______________VLTSSGITESSIYRLKGLNRKHSQELFCFHAFGQPHPVVGFEEVVEKFLDVCDGLPLSLKVLGALLHGKDLWYWKEQLGKTSTILPRKVRSTLEISFDALDKQEKEVFLDIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain