SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20797

Length: 1017 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene20797

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphatase 2C n=2 Tax=Physcomitrella patens RepID=B1B5N6_9BRYO	-	-	7.0e-36	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	protein phosphatase 2c	-	-	0.0	54%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8K0

Fln msg: Distance to subject end: 140 aas, your sequence is shorter than subject: 339 - 533

Fln protein: RRDLGRQAGGGAEGDSISKFKLVVGQSSEENIMEMDPQRRLVRSVSTPSLAMQSALSSAAAASCVGSSSSSFVKVTPIKESSYEGQEIEPKGGRAEEQVEIDKSAFYDPVEAASVINPKISRTTTTTAAATTLSRAKSENVSYLLRDSCPPHGMSSIIGRRSEMEDTVAAVPSFYSHPSFSSFNNTNNNNNSQSGSLCAFHFFGVYDGHGGSQASAFCRERFHEVLAEELRAFPPVARQEDYCRDYGEWETVLKSCFKRIDIEVGGMCPSGNCRDDIDDAASDNTSCCSTCCQDLVAPENVGSTAVVAVLSPFQIIVANCGDSRAVLSRGGKAIPFSND

Protein Length: 340

Fln nts: CGTCGTGACCTTGGAAGACAAGCAGGTGGAGGAGCTGAAGGAGATTCTATATCTAAGTTCAAGCTGGTGGTTGGTCAGAGTTCTGAGGAAAATATTATGGAAATGGATCCTCAGAGAAGATTGGTGAGATCAGTCTCGACTCCCAGCCTTGCCATGCAGAGCGCCCTTTCTTCAGCCGCCGCCGCCTCCTGTGTGGGGAGCAGCAGCAGTAGCTTCGTCAAGGTGACTCCCATAAAAGAATCTTCATACGAAGGTCAGGAGATCGAACCCAAGGGAGGCAGAGCAGAAGAGCAGGTGGAGATAGACAAGTCGGCTTTCTACGACCCTGTGGAAGCGGCGTCGGTTATAAATCCCAAGATCTCCAGGACTACGACGACCACGGCTGCTGCAACTACGCTGAGCCGCGCTAAAAGCGAGAACGTAAGTTATCTGCTCAGGGACTCGTGCCCGCCCCACGGAATGAGTTCCATAATCGGGAGACGAAGCGAAATGGAGGACACCGTAGCGGCCGTTCCGTCTTTTTACTCCCACCCTTCGTTTAGCAGCTTTAATAACACTAATAATAATAATAATTCGCAGAGCGGATCGTTGTGCGCCTTCCATTTCTTCGGTGTCTACGACGGCCACGGTGGGTCGCAGGCGTCGGCGTTTTGCAGGGAGCGTTTCCACGAAGTTCTCGCTGAAGAGCTCCGAGCTTTCCCTCCCGTGGCCCGTCAGGAGGACTACTGCAGAGACTACGGTGAGTGGGAAACGGTGCTCAAGAGTTGCTTTAAGAGAATAGACATAGAAGTGGGAGGCATGTGTCCCAGCGGGAATTGCAGGGATGATATAGACGATGCCGCGTCTGACAATACTAGTTGCTGCAGCACATGCTGTCAAGATCTCGTTGCCCCGGAAAATGTCGGGTCGACGGCCGTGGTAGCGGTGCTCAGTCCATTTCAGATTATCGTGGCTAACTGCGGTGATTCTCGAGCAGTCTTATCCAGGGGAGGCAAAGCCATCCCCTTTTCCAACGAC

Fln Alignment:

Contig20797___LSRAKSENVSYLLRDSCPPHGMSSIIGRRSEMEDTVAAVXXXXXXXXXXXXXXXXXXXXXXXXXLC-AFHFFGVYDGHGGSQASAFCRERFHEVLAEELRAFPPVARQEDYCRDYGEWETVLKSCFKRIDIEVGGMCPSGNCRDDIDDAASDNTSCCSTCCQDLVAPENVGSTAVVAVLSPFQIIVANCGDSRAVLSRGGKAIPFSND
D5A8K0_______________IGRANSESISFLLKDPCPPHSTMSIIGRRREMEDAVSAVPSFFSIPKASSIALLDGFPGFVQPPLSTALHFFAVYDGHGGSQASVFCKDRFHEALAEELRNSSP------FCIDLNDWSRVMSTCFTKIDMAVGGMCPNGSCGSGDSQKSSD-------CCQDPIAPENVGSTAVVAIVSPSQLVIANCGDSRAVLSRGGKAIPLSSD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
735			80	20	0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
175	186	GCC GCC GCC GCC	12
558	573	TAA TAA TAA TAA TAA T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain