SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20572

Length: 1595 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene20572

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	5.0e-22	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	tir-nbs-lrr resistance protein	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNM8

Fln msg: Distance to subject end: 93 aas, your sequence is shorter than subject: 191 - 283

Fln protein: MMKQNSGLQYNVFINHRGTDVKNSLASIIYNQLKTKDPTLRVFLDKNEIPYGVDFELAIETAIQSSSVHIAIFSERYAESKWCLHELDLIIKTKRKLIPIFCDIDPAALRRVEKGCYQKAFEKHRGREPVEKTKRWEDALARASYLQGLTFKMKESDYWEFGMKIVGIVLMNLKEGSLVNAECPVALEQRV

Protein Length: 192

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGATCCCTGATCGTCTTGACGTTGGCTTTCTCTCCCTTCCATTGAACGGTTAGATTCACTCCGGGTGACCTTCCAATCTGGCGCTCACGGTTTTTGCTCTCATTCGATGCAATAGGGTTCGGGCTTCCAGAGGTTCTTCCCCGGTTCACAGGTTGCAGACCAGAGGTTCGTCCTGTTTCATCTTACAGGGGCGAGCCTAACGCCTTCCACCTCACAGATCGCAGGAGCTTTTTCTAGCAGGGTAAGCAGCACCTTGAATATCAAGCGCCGAAGGCTATGAAGGTGGAACAACGTCTGCCCAGGCATGGCGCTGGATTTATCCCGGTATGCCGCATTTCGAACCCTTTCTTGGTACCAGGGTTGTGATAGTTAATGGGTTTGCCGATTTCAACGGCTTCATTCTTGTTTTCCCTTTTGCCAGGCTGATTGTTGGTTTCCTTATGGAAGGGGTTTaGACCctGGCTGTCACTCATTTTTTTGTTATGGGGGTGCTTCCACAGTTTGCTGCCCGGTGAGGGCTTTTATCTGCGTGAATTCTGTTGTTGTCTTGTTGTAGTCAGTTTTGTTTCTAAGAATTGGCGGCTCCTCTGCCCAATCAGGGTTTTGTAATAATAACAGTGCCGATAGCTTCGGGTCATGGACATATTTTATGTACATTCATTGATTCCCTGTGTTTGTATATTGAGGATTTTTGTGACTGATTGGGCTAGCTCTGCTGCTCATTCCTTTGGCGTGTTATATTCAAAGATATAAGTTTATTTTTTCCTCCACTCTGCTACAGGTCTATAGCTATCCCTGGCTCTAGCTGGTCTACGTATGTCTCTTTTGTGTCCTGTCCTGTTTCTTTGCTCATTTTTGTGGATCTTTTCCCGTTGCTTCATCGATCTGTCTCACAGTCATCCTCATTTTGGGCCATTTTTTCGCATTGCTTCTGTCGATCTATCTCACAGTCGAAACGGCCCCTCATCATACTTTTCCCATTTTCTAAGGTAAAAT_-_ATGATGAAGCAAAATTCTGGGCTGCAATACAACGTTTTCATAAATCACAGGGGAACCGACGTCAAGAACAGCCTTGCCAGCATCATTTATAATCAACTCAAAACTAAAGATCCCACTCTGCGCGTCTTCCTCGATAAAAACGAGATTCCCTACGGAGTTGATTTCGAATTAGCAATTGAAACAGCGATTCAAAGTTCATCTGTTCACATCGCGATATTTTCGGAGCGGTATGCAGAATCGAAATGGTGCTTGCATGAATTGGATCTCATTATCAAAACCAAACGGAAGCTTATTCCTATCTTCTGTGACATTGATCCTGCGGCTCTCCGTCGCGTCGAGAAAGGATGTTATCAGAAGGCCTTTGAAAAACACAGAGGGAGAGAACCCGTGGAAAAAACGAAAAGATGGGAGGATGCCCTGGCAAGAGCCTCATATCTTCAAGGCCTCACATTCAAAATGAAGGAAAGTGACTATTGGGAGTTTGGGATGAAAATTGTGGGCATTGTATTGATGAATTTGAAAGAGGGATCGTTAGTTAACGCCGAATGCCCAGTCGCCCTCGAGCAGCGAGTGG

Fln Alignment:

Contig20572___MKQNSGLQYNVFINHRGTDVKNSLASIIYNQLKTKDPTLRVFLDKNEIPYGVDFELAIETAIQSSSVHIAIFSERYAESKWCLHELDLIIKTKRKLIPIFCDIDPAALRRVEKGCYQKAFEKHRGREPVEKTKRWEDALARASYLQGLTFKMKESDYWEFGMKIVGIVLMNLKEGSLVNAECPVALEQ
A9NNM8_______________MMQNPELQFDVFINHRGTDVKNSLASLIYNQLKSKESTLRVFLDQKEIPYGFHFATVIETAIQSSSVHIAIFSERYAESSWCLDELDLILRSKRPFIPVFCDVEPWALRRIEKGCYQKAFEKHEGREPVEKTKRWKDALSQASFLQGMPFKTKENDYWDFVEKIVGIVLKKLKQGSLVVAKYPVRLEQ

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
115		75	25		0.996473
118		25	75		0.996473
119			75	25	0.996473
121			25	75	0.996473
122			25	75	0.996473
123		25		75	0.996473
128	25			75	0.996473
247	84			15	0.999986
322	90		10		0.90298
363	12		87		0.992554
660			11	88	0.923564
664			88	11	0.923564
666	11			88	0.923564
668	88	11			0.923564
670			88	11	0.923564
672	88		11		0.923564
677			11	88	0.923564
679		11		88	0.923564
680	11			88	0.923564
681	88	11			0.923564
683		11	88		0.923564
684	11			88	0.923564
738		85		14	0.993533
741	14		85		0.993533
783	83		16		0.994512
873		25		75	0.996473
874			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain