SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20404

Length: 2496 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene20404
CGTCGTGACCTTGGCTGTCACTCAATCATAGGGCAGCCTTTCATAAGAATTTCTACTGGTAGCAGAATCCTCAAGAACGGTGATCGATCTGAGTCCGCGTTAAAGTAAACAAACAAAGTCCTTTCGCTTTCGCCCGCCTTAGGTCTGATTGCAGAATGGGATCATCGGTTAGACGGGTTTTGATCCATGCGATAGCTATCGCATGGCTGTGGTTAAGCATTTCTGCTGTTACGCGGGCTTCCCATGTGATGCATGCTGTTAACACAACGAGCACAAGAGTTGAACAGCGATATCGCACAGCCTACCATTTTCAGCCTAAGAAAAACTGGATGAACGACCCTAATGCGCCAATGTTGTACCTTGGCTTCACTCTCTTCTACCAGTATAATCCTTATGGAGCAGTGTGGGGAAATATTGTCTGGGGGCATGTCGTTTCAAAGGATCTCATTCACTGGCGTTCACTGGAGCCTCCCATTGTTCCGAGTGAATGGTATGATATAAAGGGCTGCTAGTCCGGTTCGGCAACGTTACTGCCCGGAGACAAGCCTGCGATTCTATACACAGGATGGGCCAATTCATCCAAACAGCTGCAGAGCATGGTTGTTCCTAAGGATGCCTCTGATCCTCTTCTGCGGGAATGGGTAAAGATCCCTCAGAATCCTCTTTTGGTTCCAAAATTTGGAATCAATGGGAGCTCATTCAGGGATCCCACCACTGGATGGCTTGGCCACGATGGAAAATGGAGGATTCTGGTTGGAAATAAGAGGAATCGGAGAGGAGTGGCTTTGTTATACAAAAGCAAGGACTTCGTCCACTGGATGAAGGCCAAGCATCCTCTACATTCGTCGAAATTCACCGGAATGTGGGAATGCCCTGACTTTTACCCTGTTCCTCTTTATGGGAACAAAGGATTAGACACGTCCGCTATTGGGCACTCACTTAAACATGTTTTGAAGGTGAGTCTGGACGATTACAAGTACGAGTATTATACAGTGGGAACTTACTTGCGGGACAGGGATCGATACGTGCCAGACAATACCAGCAGCGACGATGAAAATGGGTTGAGATATGACTATGGCAAATTCTATGCTTCCAAAACATTTTTTGATCAAAATAAGCAGAGGCGAATTTTGTGGGGATGGATCAACGAATCGGATAGCGTGCCTGACGATAAAAGCAAGGGCTGGTCTGGTGTTCAGGCGATTCCAAGAACAATCTGGCTAGACCACGCCACGAGAGCGCGGCTTTTACAATGGCCAGTTTCCGAAGTAGAAGCTCTTCGTCGAAAGAAAACATCGAAACAGAATCTACATCTCCGCAGTGGGTCCGTTGTAGAAATTGCAGGCGTTAACGCTGCGCAGGTCGATGTGGAAGTCTCCTTCGATCTCCCGAGGGCTGAAATCGCAGACTTTAAAGATGAGGTGGGAGTAAATTTGACAGCTCAACAGCTGTGCAGCCAGTTGGGGTCAGCTGCGAGGACTGTTGTTGGGCCATTTGGGTTGCTTGTTTAGCTTCCAAGGGCTTGAATGAACGCACTGCTGTGTTTTTTCAGATCGTTCGCTATCGAAAACAATTGAAGTTATTAATGTGCAGTGATCAGAGCAGATCGTCTTTGCAGAGCGACGTTGACAAGACAACATATGGAACTTTCGTGAAACGTTTGGGTTATTTCAAGGAGAAGAGTGTTTCATTGCGAGTCCTGGTTGATCATTCCATCGTTGAGAGCTTTGGAGAAGGGGGAAAAGCGTGCATAACGGCTAGAGCTTATCCCACCCTGGCAATTGGCAAAGACGCCCATCTCTACGCCTTCAATAACGGCACTTCCACTGTCACTGCCACCAAATTAACCGCATGGGAAATGGCTTCATCCAATGGCAGTACTCTGCGCTAAATAAATGAGTTTTAAAATGTGCATTACAGCGATAAAAACTTCTCAATTTGTCAAAAAAAACGGCAGAGGTTTTCGTCGTGACCCCCAAACATAAGTTGCTGAGGAGTTTTGAACGGTTATTTTTATCAGTTGCTCAGTTTTCCATGCGGAAAACAAGTTCAGTTCCATAAAGACGCGTAGAATCTGCATTCGACCTGAGGTGATCAGTTCATCGTTCAATGTGTGTGGATTTAGCTGTAGATTTTTTGGGTAGTCTGTTTGGAAGAATAGTGGAATTAAGAATAATTATTCTACGTACAAGGAGTGTTTATATGTACTCCGAGACCTTTCTCCCCCCTTCAATAATGTTGTGGATTTTGCGGCTAGCCCATTGGCCGAGTTGCACCATCCACCTTGCCGAGTTGCCGAGGTGTCATTAATATTATAGCCAGTGGAAAAGTTCGTTAGTTGGATAAGATAAAACTGTTGTGTCATCACCGATTCATCACAGAATACATATAATGGATATGTACGGTATTCCGTCTTTTCATTCCATAAAGGTTGTTACTTTCATAAAACCTGGAGTATGCTCAAATATGTATTGATTTATTAAAATACATTTGGCC

Ace file of the UniGene sp_v2.0_unigene20404

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-fructofuranosidase, insoluble isoenzyme 3, putative n=1 Tax=Ricinus communis RepID=B9SWG8_RICCO	-	-	55%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme 1; Daucus carota (Carrot).	-	-	54%
Blast2go	cell wall invertase	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-
Sma3	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 32, active site	IPR018053	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P26792

Fln msg: Overlapping hits, possible frame ERROR between 1571 and 1508,

Fln protein: MGSSVRRVLIHAIAIAWLWLSISAVTRASHVMHAVNTTSTRVEQRYRTAYHFQPKKNWMNDPNAPMLYLGFTLFYQYNPYGAVWGNIVWGHVVSKDLIHWRSLEPPIVPSEWYDIKGC*SGSATLLPGDKPAILYTGWANSSKQLQSMVVPKDASDPLLREWVKIPQNPLLVPKFGINGSSFRDPTTGWLGHDGKWRILVGNKRNRRGVALLYKSKDFVHWMKAKHPLHSSKFTGMWECPDFYPVPLYGNKGLDTSAIGHSLKHVLKVSLDDYKYEYYTVGTYLRDRDRYVPDNTSSDDENGLRYDYGKFYASKTFFDQNKQRRILWGWINESDSVPDDKSKGWSGVQAIPRTIWLDHATRARLLQWPVSEVEALRRKKTSKQNLHLRSGSVVEIAGVNAAQVDVEVSFDLPRAEIADFKDEVGVNLTAQQLCSQLGSAARTVVGPFGLLxxxxxxxxxxxxxxxxxxxxxxxLKLLMCSDQSRSSLQSDVDKTTYGTFVKRLGYFKEKSVSLRVLVDHSIVESFGEGGKACITARAYPTLAIGKDAHLYAFNNGTSTVTATKLTAWEMASSNGSTLR*

Protein Length: 580

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATAGGGCAGCCTTTCATAAGAATTTCTACTGGTAGCAGAATCCTCAAGAACGGTGATCGATCTGAGTCCGCGTTAAAGTAAACAAACAAAGTCCTTTCGCTTTCGCCCGCCTTAGGTCTGATTGCAGA_-_ATGGGATCATCGGTTAGACGGGTTTTGATCCATGCGATAGCTATCGCATGGCTGTGGTTAAGCATTTCTGCTGTTACGCGGGCTTCCCATGTGATGCATGCTGTTAACACAACGAGCACAAGAGTTGAACAGCGATATCGCACAGCCTACCATTTTCAGCCTAAGAAAAACTGGATGAACGACCCTAATGCGCCAATGTTGTACCTTGGCTTCACTCTCTTCTACCAGTATAATCCTTATGGAGCAGTGTGGGGAAATATTGTCTGGGGGCATGTCGTTTCAAAGGATCTCATTCACTGGCGTTCACTGGAGCCTCCCATTGTTCCGAGTGAATGGTATGATATAAAGGGCTGCTAGTCCGGTTCGGCAACGTTACTGCCCGGAGACAAGCCTGCGATTCTATACACAGGATGGGCCAATTCATCCAAACAGCTGCAGAGCATGGTTGTTCCTAAGGATGCCTCTGATCCTCTTCTGCGGGAATGGGTAAAGATCCCTCAGAATCCTCTTTTGGTTCCAAAATTTGGAATCAATGGGAGCTCATTCAGGGATCCCACCACTGGATGGCTTGGCCACGATGGAAAATGGAGGATTCTGGTTGGAAATAAGAGGAATCGGAGAGGAGTGGCTTTGTTATACAAAAGCAAGGACTTCGTCCACTGGATGAAGGCCAAGCATCCTCTACATTCGTCGAAATTCACCGGAATGTGGGAATGCCCTGACTTTTACCCTGTTCCTCTTTATGGGAACAAAGGATTAGACACGTCCGCTATTGGGCACTCACTTAAACATGTTTTGAAGGTGAGTCTGGACGATTACAAGTACGAGTATTATACAGTGGGAACTTACTTGCGGGACAGGGATCGATACGTGCCAGACAATACCAGCAGCGACGATGAAAATGGGTTGAGATATGACTATGGCAAATTCTATGCTTCCAAAACATTTTTTGATCAAAATAAGCAGAGGCGAATTTTGTGGGGATGGATCAACGAATCGGATAGCGTGCCTGACGATAAAAGCAAGGGCTGGTCTGGTGTTCAGGCGATTCCAAGAACAATCTGGCTAGACCACGCCACGAGAGCGCGGCTTTTACAATGGCCAGTTTCCGAAGTAGAAGCTCTTCGTCGAAAGAAAACATCGAAACAGAATCTACATCTCCGCAGTGGGTCCGTTGTAGAAATTGCAGGCGTTAACGCTGCGCAGGTCGATGTGGAAGTCTCCTTCGATCTCCCGAGGGCTGAAATCGCAGACTTTAAAGATGAGGTGGGAGTAAATTTGACAGCTCAACAGCTGTGCAGCCAGTTGGGGTCAGCTGCGAGGACTGTTGTTGGGCCATTTGGGTTGCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTGAAGTTATTAATGTGCAGTGATCAGAGCAGATCGTCTTTGCAGAGCGACGTTGACAAGACAACATATGGAACTTTCGTGAAACGTTTGGGTTATTTCAAGGAGAAGAGTGTTTCATTGCGAGTCCTGGTTGATCATTCCATCGTTGAGAGCTTTGGAGAAGGGGGAAAAGCGTGCATAACGGCTAGAGCTTATCCCACCCTGGCAATTGGCAAAGACGCCCATCTCTACGCCTTCAATAACGGCACTTCCACTGTCACTGCCACCAAATTAACCGCATGGGAAATGGCTTCATCCAATGGCAGTACTCTGCGCTAA___ATAAATGAGTTTTAAAATGTGCATTACAGCGATAAAAACTTCTCAATTTGTCAAAAAAAACGGCAGAGGTTTTCGTCGTGACCCCCAAACATAAGTTGCTGAGGAGTTTTGAACGGTTATTTTTATCAGTTGCTCAGTTTTCCATGCGGAAAACAAGTTCAGTTCCATAAAGACGCGTAGAATCTGCATTCGACCTGAGGTGATCAGTTCATCGTTCAATGTGTGTGGATTTAGCTGTAGATTTTTTGGGTAGTCTGTTTGGAAGAATAGTGGAATTAAGAATAATTATTCTACGTACAAGGAGTGTTTATATGTACTCCGAGACCTTTCTCCCCCCTTCAATAATGTTGTGGATTTTGCGGCTAGCCCATTGGCCGAGTTGCACCATCCACCTTGCCGAGTTGCCGAGGTGTCATTAATATTATAGCCAGTGGAAAAGTTCGTTAGTTGGATAAGATAAAACTGTTGTGTCATCACCGATTCATCACAGAATACATATAATGGATATGTACGGTATTCCGTCTTTTCATTCCATAAAGGTTGTTACTTTCATAAAACCTGGAGTATGCTCAAATATGTATTGATTTATTAAAATACATTTGGCC

Fln Alignment:

Contig20404___LIHAIAIAWLWLSISAVTRASHVMH--AVNTTSTRVEQRYRTAYHFQPKKNWMNDPNAPMLYLG-FTLFYQYNPYGAVWGNIVWGHVVSKDLIHWRSLEPPIVPSEWYDIKGC*SGSATLLPGDKPAILYTGWANS---SKQLQSMVVPKDASDPLLREWVKIPQNPLLVPKFGINGSSFRDPTTGWLGHDGKWRILVGNKRNRRGVALLYKSKDFVHWMKAKHPLHSSKFTGMWECPDFYPVPLYGNKGLDTSAIGHSLKHVLKVSLDDYKYEYYTVGTYLRDRDRYVPDNTSSDDENGLRYDYGKFYASKTFFDQNKQRRILWGWINESDSVPDDKSKGWSGVQAIPRTIWLDHATRARLLQWPVSEVEALRRKKTS-KQNLHLRSGSVVEIAGVNAAQVDVEVSFDLPRAEIADFKDEVGVNLTAQQLCSQLGSAARTVVGPFGLLVxxxxxxxxxxxxxxxxxxxxxQLKLLMCSDQSRSSLQSDVDKTTYGTFVKRLGYFKEKSVSLRVLVDHSIVESFGEGGKACITARAYPTLAIGKDAHLYAFNNGTSTVTATKLTAWEM
P26792_______________LLAILLVTTTTLHINGV-EAFHEIHYNLQSVGAENVKQVHRTGYHFQPKQNWINDPNGPMYYKGVYHLFYQYNPKGAVWGNIVWAHSVSTDLINWTPLEPAIFPSKPFDKYGCRSGSATILPGNKPVILYTGIVEGPPKNVQVQNYAIPANLSDPYLRKWIKPDNNPLVVANNGENATAFRDPTTAWLDKSGHWKMLVGSKRNRRGIAYLYRSKDFIKWTKAKHPIHSQANTGMWECPDFFPVSLKGLNGLDTSVTGESVKHVLKVSLDLTRYEYYTVGTYLTDKDRYIPDNTSVDGWAGLRYDYGNFYASKTFFDPSKNRRILWGWANESDSTAHDVAKGWAGIQLIPRTLWLDPSGK-QLMQWPIEELETLRGSKVKFSRKQDLSKGILVEVKGITAAQADVEVTFSFKSLAKREPFDPKWLEYDAEKICSLKGSTVQGGVGPFGLLTxxxxxxxxxxxxxxxxxxxxxTHKVLMCSDATRSSLKEGLYRPSFAGFVD-VDLATDKKISLRSLIDNSVVESFGAKGKTCISSRVYPTLAVYENAHLYVFNNGSETITVENLDAWSM

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
150			33	66	0.997452
152	33		66		0.997452
195	33			66	0.997452
268	33		66		1.0
291	33		66		1.0
306		33		66	1.0
1094	75	25			0.996473
1097		75		25	0.996473
1272		66	33		0.997452
1395		62	37		1.0
1400		37	62		1.0
1530	25	75			0.996473
1556		25		75	0.996473
1685	80		20		0.995493
1725	12	87			0.992554
1752	80		20		0.999996
1846	50			50	1.0
1932	11			88	0.923564
1933	88			11	0.923564
1945	88			11	0.923564
1948			12	87	0.992554
1960	33	16	33		1.0
1969	27		72		1.0
1993	50			50	1.0
2056	88		11		0.923564
2068		44		55	1.0
2088	90		10		0.90298
2090			10	90	0.90298
2091		90		10	0.90298
2202			33	66	0.997452
2311		37		62	1.0
2395	40	60			1.0
2412		58		41	1.0
2435			20	80	0.995493
2463	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain