SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20006

Length: 545 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene20006
CGTCGTGACCTTGGCTGTCACTCATTTTTCGTTTGTATTTTAACTAACACCTGATCAGATCATGACAGTGACATGGACACGAACATGTAAAATTTAAGAGCAGGTCAATACTAAAATTAATACCGCACTTCTAGATTCGCCCGCTCTCGCCATAGAGGCGTGTGGGTGGAACATCGTGTGGAACATCTATCAGGATTGCTGAGAGGAGTAGAAAAAAAATGGAAGTCATGGAGCACAACAGCGCCGACTTCCTTCTCTCGACGCCCAGCGGCAGTAGCAGGCGACGGTCATATGCACTGATTATCCTCAATTACGACGTCCCTCGCTTCACTGCAGTTCTCTGGGATCGAGCGCAGTTACGGTTGTGTGCTGACGGAGGGGCTAATCGCCTCTACGATGAAGTTCCGAGCTTCTTCCCCGAGGAAGATCCTCTTCTTGTTCGTCAAAGGGAACCAATCAATTTCTGGTACAACAATATCATAATTCTTCAACTTTTTTCCATAGTTCTGTCATCTGTCCTTCTGAAGAATTTTGAACACTAGCTT

Ace file of the UniGene sp_v2.0_unigene20006

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thiamin pyrophosphokinase, putative n=1 Tax=Ricinus communis RepID=B9SAN6_RICCO	-	-	2.0e-15	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	thiamin pyrophosphokinase	-	-	7.48446e-21	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Thiamine diphosphokinase.	EC:2.7.6.2	-	7.48446e-21	70%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Thiamine metabolism	00730		7.48446e-21	70%
Blast2go	Metabolic pathways	01100		7.48446e-21	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of seed germination	GO:0010029	Biological Process	7.48446e-21	70%
Blast2go	thiamine metabolic process	GO:0006772	Biological Process	7.48446e-21	70%
Blast2go	protein homooligomerization	GO:0051260	Biological Process	7.48446e-21	70%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	7.48446e-21	70%
Blast2go	cellular potassium ion homeostasis	GO:0030007	Biological Process	7.48446e-21	70%
Blast2go	calcium-activated potassium channel activity	GO:0015269	Molecular Function	7.48446e-21	70%
Blast2go	thiamine diphosphokinase activity	GO:0004788	Molecular Function	7.48446e-21	70%
Blast2go	outward rectifier potassium channel activity	GO:0015271	Molecular Function	7.48446e-21	70%
Blast2go	cytosol	GO:0005829	Cellular Component	7.48446e-21	70%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	7.48446e-21	70%

Source	InterPros	Term	Type	Identity
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	Thiamin pyrophosphokinase, eukaryotic	IPR016966	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN96

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 154 aas, your sequence is shorter than subject: 108 - 230

Fln protein: MEVMEHNSADFLLSTPSGSSRRRSYALIILNYDVPRFTAVLWDRAQLRLCADGGANRLYDEVPSFFPEEDPLLVRQREPINFWYNNIIILQLFSIVLSSVLLKNFEH*

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCGTTTGTATTTTAACTAACACCTGATCAGATCATGACAGTGACATGGACACGAACATGTAAAATTTAAGAGCAGGTCAATACTAAAATTAATACCGCACTTCTAGATTCGCCCGCTCTCGCCATAGAGGCGTGTGGGTGGAACATCGTGTGGAACATCTATCAGGATTGCTGAGAGGAGTAGAAAAAAA_-_ATGGAAGTCATGGAGCACAACAGCGCCGACTTCCTTCTCTCGACGCCCAGCGGCAGTAGCAGGCGACGGTCATATGCACTGATTATCCTCAATTACGACGTCCCTCGCTTCACTGCAGTTCTCTGGGATCGAGCGCAGTTACGGTTGTGTGCTGACGGAGGGGCTAATCGCCTCTACGATGAAGTTCCGAGCTTCTTCCCCGAGGAAGATCCTCTTCTTGTTCGTCAAAGGGAACCAATCAATTTCTGGTACAACAATATCATAATTCTTCAACTTTTTTCCATAGTTCTGTCATCTGTCCTTCTGAAGAATTTTGAACACTAGCTT

Fln Alignment:

Contig20006___QLRLCADGGANRLYDEVPSFFPEEDPLLVRQR
B8LN96_______________ELRLCADGGANRLYDEIPTFFPEEDPLLVRKR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
99	66	33			0.997452
103	66		33		0.997452
104			66	33	0.997452
106	33			66	0.997452
108	66	33			0.997452
109	66			33	0.997452
112	66		33		0.997452
115	66		33		0.997452
116	66			33	0.997452
117	66	33			0.997452
119		33		66	0.997452
121	66	33			0.997452
236		80		20	0.995493
242	50		50		1.0
276	50		50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain