SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19894

Length: 354 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene19894
CGTCGTGACCTTGGCTGTCACTCAATCAAATTTTTGTGGAATTGAAATACAACAACGGTTGTTGGGTTCGGTTTTGGCTCGACTTACTTGGTGGCGGCGACGCATCTACAACGACGGACTTCACGGGTCACTGGAGTTGAGTTCAGCGAGAGACTGACATGCTATGGAATTGCCTCCAATTTGATCATCTACTTGACCACTGTGTTGCATGAGGAAACTGCAAGGGCTGCCAAGGATGTCAACGACTGGGCGGGTGTCACTACCATCATGCCTCTGCTAGGAGGATTCTTGGCAGATGCATACACTGGACGTTACTGGATGGTTCTAATCTCTTCAGTAATATATCTACAGGGA

Ace file of the UniGene sp_v2.0_unigene19894

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9T755_RICCO	-	-	8.0e-22	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	peptide transporter ptr3-b	-	-	3.12631e-27	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.12631e-27	77%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	POX	IPR006563	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Distance to subject end: 472 aas, atg_distance in limit (1-15): atg_distance = 15, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 103 - 604

Fln protein: NTTTVVGFGFGSTYLVAATHLQRRTSRVTGVEFSERLTCYGIASNLIIYLTTVLHEETARAAKDVNDWAGVTTIMPLLGGFLADAYTGRYWMVLISSVIYLQG

Protein Length: 104

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAAATTTTTGTGGAATTGAAATACAACAACGGTTGTTGGGTTCGGTTTTGGCTCGACTTACTTGGTGGCGGCGACGCATCTACAACGACGGACTTCACGGGTCACTGGAGTTGAGTTCAGCGAGAGACTGACATGCTATGGAATTGCCTCCAATTTGATCATCTACTTGACCACTGTGTTGCATGAGGAAACTGCAAGGGCTGCCAAGGATGTCAACGACTGGGCGGGTGTCACTACCATCATGCCTCTGCTAGGAGGATTCTTGGCAGATGCATACACTGGACGTTACTGGATGGTTCTAATCTCTTCAGTAATATATCTACAGGGA

Fln Alignment:

Contig19894___VTGVEFSERLTCYGIASNLIIYLTTVLHEETARAAKDVNDWAGVTTIMPLLGGFLADAYTGRYWMVLISSVIYLQG
A9NWU3_______________IIGIEIAERLAYYGIASNLVTYLTNIMHQTTVTAVKNVNVWAGTASMLPLFGAFVADSYLGRYRTILISSIVYLLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain