SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19790

Length: 1217 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19790

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vacuoleless1 (VCL1) [Arabidopsis thaliana] gb\|AAK43713.1\|AF359240_1 VCL1 [Arabidopsis thaliana] gb\|AAK82510.1\| At2g38020/T8P21.7 [Arabidopsis thaliana] gb\|AAM98105.1\| At2g38020/T8P21.7 [Arabidopsis thaliana] gb\|AEC09479.1\| vacuoleless1 (VCL1) [Arabidopsis	-	-	2.0e-22	77%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	75%
Blast2go	vacuolar protein sorting-associated protein 16 homolog	-	-	7.83842e-23	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	7.83842e-23	79%

Source	InterPros	Term	Type	Identity
Sma3	Vps16, C-terminal	IPR006925	-	-
Sma3	Vps16, N-terminal	IPR006926	-	-
Sma3	Vacuolar protein sorting-associated protein 16	IPR016534	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
220	20		80		0.995493
222		80	20		0.995493
223	80		20		0.995493
224	80		20		0.995493
1171	33		66		0.997452
1174			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain