SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19564

Length: 609 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19564

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative beta-D-xylosidase 6 [Arabidopsis thaliana] sp\|Q9LXA8.1\|BXL6_ARATH RecName: Full=Probable beta-D-xylosidase 6; Short=AtBXL6; Flags: Precursor emb\|CAB89387.1\| beta-xylosidase-like protein [Arabidopsis thaliana] gb\|AAL09717.1\| AT5g10560/F12B17_90 [A	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	glycosyl hydrolase family 3 protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	71%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	71%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	71%
Blast2go	apoplast	GO:0048046	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
150		33		66	0.997452
156		66	33		0.997452
158		33	66		0.997452
161	66			33	0.997452
163		66	33		0.997452
165	66			33	0.997452
171		33	66		0.997452
175	66	33			0.997452
273			66	33	0.997452
280	66	33			0.997452
289	66			33	0.997452
290		33	66		0.997452
292	66	33			0.997452
293	66			33	0.997452
294		33	66		0.997452
295	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain