SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19542

Length: 435 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene19542
AAGTTCATTTGTAACTACTATGGATATATCAAGTAATGAATTCAATGGAAGCCTTCCGGCTTCGGTCGGCCAGTTGCAGTCATTGAGGTTCCTCAGTATGTCCAACAATGGGCTCTCTGGGGCTATTCCTGGATCTCTAATCGGATGCAGCAAGCTGTCTTTTATAGATCTAAGTAACAATCTTTTCTCGGGAAGCATTCCCAAGGAGTTGTTCCAGTTGGGTTTAGAGAAGGTGGACTTATCTTCAAACAATCTCATAGGGCAGATACCCTCTGGTTCATATCATCTGTATGAGTTCCTGCAGGAATTGGATTTATCAAATAACATGTTGGATGGAGGAATACCCATTCAGATCGCACAGTGCTTCAATTTGAGGTACCTGAACTTATCTGGGAATCTTCTTGAGGCAAGGATTCCACAGGAGTTTGGTTATTT

Ace file of the UniGene sp_v2.0_unigene19542

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor-like protein kinase [Oryza sativa Japonica Group] gb\|EAZ14887.1\| hypothetical protein OsJ_04818 [Oryza sativa Japonica Group]	-	-	1.0e-32	54%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	35%
Blast2go	probably inactive leucine-rich repeat receptor-like protein kinase at3g28040-like	-	-	3.06604e-42	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	3.06604e-42	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 901 aas, your sequence is shorter than subject: 144 - 1145

Fln protein: SSFVTTMDISSNEFNGSLPASVGQLQSLRFLSMSNNGLSGAIPGSLIGCSKLSFIDLSNNLFSGSIPKELFQLGLEKVDLSSNNLIGQIPSGSYHLYEFLQELDLSNNMLDGGIPIQIAQCFNLRYLNLSGNLLEARIPQEFGY

Protein Length: 145

Fln nts: AAGTTCATTTGTAACTACTATGGATATATCAAGTAATGAATTCAATGGAAGCCTTCCGGCTTCGGTCGGCCAGTTGCAGTCATTGAGGTTCCTCAGTATGTCCAACAATGGGCTCTCTGGGGCTATTCCTGGATCTCTAATCGGATGCAGCAAGCTGTCTTTTATAGATCTAAGTAACAATCTTTTCTCGGGAAGCATTCCCAAGGAGTTGTTCCAGTTGGGTTTAGAGAAGGTGGACTTATCTTCAAACAATCTCATAGGGCAGATACCCTCTGGTTCATATCATCTGTATGAGTTCCTGCAGGAATTGGATTTATCAAATAACATGTTGGATGGAGGAATACCCATTCAGATCGCACAGTGCTTCAATTTGAGGTACCTGAACTTATCTGGGAATCTTCTTGAGGCAAGGATTCCACAGGAGTTTGGTTATTT

Fln Alignment:

Contig19542___SFVTTMDISSNEFNGSLPASVGQLQSLRFLSMSNNGLSGAIPGSLIGCSKLSFIDLSNNLFSGSIPKELFQL-GLEKVDLSSNNLIGQIPS--GSYHLYEFLQELDLSNNMLDGGIPIQIAQCFNLRYLNLSGN-LLEARIPQE
Q9FEU2_______________NLVTEINIQSVQIAGNVPSQFAVLGSLRSLVISAANLTGSIPAEIGGYESLEILDLSGNRLRGNIPAEISKLKNLKSLILNSNQLQGSIPAEIGNCH---NLVDLVVFDNQLSGKIPAELGRLANLEVFRAGGNENIEGTLPDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain