SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19451

Length: 2717 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene19451
CGTCGTGACCTTGGCTGTCACTCAGGTTTGTAGGTATAAGTTCTGAGAGTGCAGGGGGTACTGAAAGGTCGGCGCCATTGTTGGGATTGCTGGGGTTCGTTGTGTCGAACAGTTGGTTGCTTTGAGATATTTGGGATACCTATATCCGTTCTGAAGATGAAGTACGTTCTGGTAACTGGTGGTGTGGTCAGTGGCCTCGGAAAGGGAGTCACTGCCAGCAGCATTGGTTTGGTTTTGAAAGCCTGTGGCCTTCGTGTGACTTCTATCAAAATAGACCCTTATCTCAATACAGATGCAGGAACCATGTCTCCGTTTGAGCATGGAGAAGTATTTGTTCTAGACGACGGTGGCGAGGTTGACTTGGACCTTGGCAACTATGAAAGATTTCTGGATGTGCGATTAACTAGAGATAACAATGTCACCACTGGTAAAATATACCAGTCAGTCATTGACAAAGAAAGGAGGGGAGATTTCTTGGGAAAGACTGTCCAGGTAGTTCCACATATCACGGATGCCATTCAGGAGTGGATTGAACGCGTTTCACTTATTTCTGTGGATGGAAGTGAAAAACCTGCTGATGTATGTGTCATTGAGTTGGGGGGAACAGTAGGGGATATTGAATCAATGCCATTTATTGAGGCTTTGCGTCAGCTCTCCTATCGTGTTGGCCCAGGAAATTTCTGTCTGGTGCATGTGAGCCTTGTACCTGTTTTAGGTGTTGTTGGTGAGCAGAAAACCAAGCCAACACAGCACAGTGTCCGTGAACTTCGAGGATTAGGTTTGACACCCAATATTCTAGCTTGTCGCAGTGCTCAGGCTTTGGAAGAGAATACTAAGGAAAAGTTATCACAATTTTGCCATGTTCCAGCCGGGAACATTCTCACTATATATGATGTTCCAAACATTTGGCATGTCCCCCTTCTACTAAGGGATCAAAAGGCTCATGAAGCAATCTTGAAAGAGTTGAACCTTTCAAGTGTTACTCGATCCCCTTGTCTGAAAAATTGGACTAAAAGAGCAGAAAATTTTGATAACCTTGTAACTCCAGTCAAAATTGCAATGGTGGGAAAATACACTGGCCTTTCTGATGCTTATCTTTCTGTTCTGAAGGCCCTTGAACATGCTTCTATAGAATGTTCGAGAAAATTGTTAGTGGAATGGGTTGCAGCATCTGACCTTGAAGACACAGTTGCAAAAGAGGCACCAGATGTTCATGCAGCTGCTTGGAAATCTCTCATGGGTGCAGATGGTGTTCTGGTTCCAGGTGGATTTGGTGATCGTGGTGTCCAAGGGAAAATACTTGCAGCAAAATATGCTCGAGAAAAGAAAATCCCATATCTTGGAATTTGCTTGGGAATGCAGATTGCTGTGATTGAGTATGCTCGTTCTGTTCTTGGATTGGTGGGGGCTAACAGCACAGAGTTTGACCCAGAAACTTCAAATCCCTGTGTTATTTTCATGCCTGAGGGTTCAAAAACCCATATGGGGGGTACCATGCGACTGGGTTCTAGGAGGACATATTTCCAGAGTGCGGATTGCATCACTGCAAAGTTATACCAAAAAGCTAAAGCTGATTATGTGGATGAGCGACATCGACATAGATATGAGGTTAACCCTGATATGGTTGAAAAGCTTGAACAGGAGGGGCTACTGTTTGTGGGCAAGGATGAAACCGATAGACGTATGCAGATACTGGAATTAACAGGCCATCCTTATTTTGTTGGAAGTCCAGTTCCATCCAGAATTCAAGTCAAGACCTGGAAAAGCATCTGCAGTCTTCTTGGGCCTCATACTAGCAGCGTCATGTCAGCTTGATTCATATTTGAACAACCCTGGCAAACAGAGCAATTTGAGTCGGAGTCCTCATGTGGATGATAGTAGCAGAAGTCCTGTATCACCTGGAGGGAATGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCTTGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCTTGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCTTGTATCAAATGGTGTTGGAAATGGCATTGTGAATGGTCCTGCTAATGGTGTTACGAAAAGGAATCCACCTCCTAACTGCTCAAATGCGAATGGAAATGGCTTCCATGCCTAAATAAGAGTGAACCGATTGAGTTTGGATTGTAAAGTTTTGGTGCTTTAAGTTTGAGTCATTGTTAGCATCATTTTTTCTTTGATACTGAAATTAAGTGTTGCTTGCTCTCAAGCATTACAAAAGAGGTCCAAATCTACAATTTGCGGAACGTTCTGTACAGAAGATAGAGTGGGGTATCTGAGATGTAGAACTTACCTGTTGGATATGACCACAGAATATATTGTTACACTATCAGGCTACAGGGTACTGGAGAACAAATTGTGTTGTGTTCTTCCTGACTTTGACAGTTCTTTGTAGTGGCTGCTGCTGATTCATTGGTGAATGCTATTTATGGTTTTAAAAAATTTCAGGTTCCCACTATGTGGGAAGCACTGTTGTCATTCAACTGATGGCTCGGGACAAAGTTTGTCATATATTTTTAATGGGTTTATACTACGCCATAAAGATATTAAATTGAAACTTGTCAATAGCAGAACTTGGAAATACATCTCTACTATGTCACAATGAAATTGTTCAAGTAACAATTGACTACTCTTATTAAGACTTGCTGCTTCCTTTTTGGAAACACATG

Ace file of the UniGene sp_v2.0_unigene19451

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative CTP synthetase [Oryza sativa Japonica Group]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	ctp synthase	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	0.0	86%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	CTP synthase	IPR004468	-	-
Sma3	CTP synthase, N-terminal	IPR017456	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3		IPR000991	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLK6

Fln msg: your sequence is longer than subject: 553 - 445

Fln protein: MKYVLVTGGVVSGLGKGVTASSIGLVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLTRDNNVTTGKIYQSVIDKERRGDFLGKTVQVVPHITDAIQEWIERVSLISVDGSEKPADVCVIELGGTVGDIESMPFIEALRQLSYRVGPGNFCLVHVSLVPVLGVVGEQKTKPTQHSVRELRGLGLTPNILACRSAQALEENTKEKLSQFCHVPAGNILTIYDVPNIWHVPLLLRDQKAHEAILKELNLSSVTRSPCLKNWTKRAENFDNLVTPVKIAMVGKYTGLSDAYLSVLKALEHASIECSRKLLVEWVAASDLEDTVAKEAPDVHAAAWKSLMGADGVLVPGGFGDRGVQGKILAAKYAREKKIPYLGICLGMQIAVIEYARSVLGLVGANSTEFDPETSNPCVIFMPEGSKTHMGGTMRLGSRRTYFQSADCITAKLYQKAKADYVDERHRHRYEVNPDMVEKLEQEGLLFVGKDETDRRMQILELTGHPYFVGSPVPSRIQVKTWKSICSLLGPHTSSVMSA*

Protein Length: 554

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTGTAGGTATAAGTTCTGAGAGTGCAGGGGGTACTGAAAGGTCGGCGCCATTGTTGGGATTGCTGGGGTTCGTTGTGTCGAACAGTTGGTTGCTTTGAGATATTTGGGATACCTATATCCGTTCTGAAG_-_ATGAAGTACGTTCTGGTAACTGGTGGTGTGGTCAGTGGCCTCGGAAAGGGAGTCACTGCCAGCAGCATTGGTTTGGTTTTGAAAGCCTGTGGCCTTCGTGTGACTTCTATCAAAATAGACCCTTATCTCAATACAGATGCAGGAACCATGTCTCCGTTTGAGCATGGAGAAGTATTTGTTCTAGACGACGGTGGCGAGGTTGACTTGGACCTTGGCAACTATGAAAGATTTCTGGATGTGCGATTAACTAGAGATAACAATGTCACCACTGGTAAAATATACCAGTCAGTCATTGACAAAGAAAGGAGGGGAGATTTCTTGGGAAAGACTGTCCAGGTAGTTCCACATATCACGGATGCCATTCAGGAGTGGATTGAACGCGTTTCACTTATTTCTGTGGATGGAAGTGAAAAACCTGCTGATGTATGTGTCATTGAGTTGGGGGGAACAGTAGGGGATATTGAATCAATGCCATTTATTGAGGCTTTGCGTCAGCTCTCCTATCGTGTTGGCCCAGGAAATTTCTGTCTGGTGCATGTGAGCCTTGTACCTGTTTTAGGTGTTGTTGGTGAGCAGAAAACCAAGCCAACACAGCACAGTGTCCGTGAACTTCGAGGATTAGGTTTGACACCCAATATTCTAGCTTGTCGCAGTGCTCAGGCTTTGGAAGAGAATACTAAGGAAAAGTTATCACAATTTTGCCATGTTCCAGCCGGGAACATTCTCACTATATATGATGTTCCAAACATTTGGCATGTCCCCCTTCTACTAAGGGATCAAAAGGCTCATGAAGCAATCTTGAAAGAGTTGAACCTTTCAAGTGTTACTCGATCCCCTTGTCTGAAAAATTGGACTAAAAGAGCAGAAAATTTTGATAACCTTGTAACTCCAGTCAAAATTGCAATGGTGGGAAAATACACTGGCCTTTCTGATGCTTATCTTTCTGTTCTGAAGGCCCTTGAACATGCTTCTATAGAATGTTCGAGAAAATTGTTAGTGGAATGGGTTGCAGCATCTGACCTTGAAGACACAGTTGCAAAAGAGGCACCAGATGTTCATGCAGCTGCTTGGAAATCTCTCATGGGTGCAGATGGTGTTCTGGTTCCAGGTGGATTTGGTGATCGTGGTGTCCAAGGGAAAATACTTGCAGCAAAATATGCTCGAGAAAAGAAAATCCCATATCTTGGAATTTGCTTGGGAATGCAGATTGCTGTGATTGAGTATGCTCGTTCTGTTCTTGGATTGGTGGGGGCTAACAGCACAGAGTTTGACCCAGAAACTTCAAATCCCTGTGTTATTTTCATGCCTGAGGGTTCAAAAACCCATATGGGGGGTACCATGCGACTGGGTTCTAGGAGGACATATTTCCAGAGTGCGGATTGCATCACTGCAAAGTTATACCAAAAAGCTAAAGCTGATTATGTGGATGAGCGACATCGACATAGATATGAGGTTAACCCTGATATGGTTGAAAAGCTTGAACAGGAGGGGCTACTGTTTGTGGGCAAGGATGAAACCGATAGACGTATGCAGATACTGGAATTAACAGGCCATCCTTATTTTGTTGGAAGTCCAGTTCCATCCAGAATTCAAGTCAAGACCTGGAAAAGCATCTGCAGTCTTCTTGGGCCTCATACTAGCAGCGTCATGTCAGCTTGA___TTCATATTTGAACAACCCTGGCAAACAGAGCAATTTGAGTCGGAGTCCTCATGTGGATGATAGTAGCAGAAGTCCTGTATCACCTGGAGGGAATGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCTTGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCTTGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCTTGTATCAAATGGTGTTGGAAATGGCATTGTGAATGGTCCTGCTAATGGTGTTACGAAAAGGAATCCACCTCCTAACTGCTCAAATGCGAATGGAAATGGCTTCCATGCCTAAATAAGAGTGAACCGATTGAGTTTGGATTGTAAAGTTTTGGTGCTTTAAGTTTGAGTCATTGTTAGCATCATTTTTTCTTTGATACTGAAATTAAGTGTTGCTTGCTCTCAAGCATTACAAAAGAGGTCCAAATCTACAATTTGCGGAACGTTCTGTACAGAAGATAGAGTGGGGTATCTGAGATGTAGAACTTACCTGTTGGATATGACCACAGAATATATTGTTACACTATCAGGCTACAGGGTACTGGAGAACAAATTGTGTTGTGTTCTTCCTGACTTTGACAGTTCTTTGTAGTGGCTGCTGCTGATTCATTGGTGAATGCTATTTATGGTTTTAAAAAATTTCAGGTTCCCACTATGTGGGAAGCACTGTTGTCATTCAACTGATGGCTCGGGACAAAGTTTGTCATATATTTTTAATGGGTTTATACTACGCCATAAAGATATTAAATTGAAACTTGTCAATAGCAGAACTTGGAAATACATCTCTACTATGTCACAATGAAATTGTTCAAGTAACAATTGACTACTCTTATTAAGACTTGCTGCTTCCTTTTTGGAAACACATG

Fln Alignment:

Contig19451___MKYXXXXXXXXXXXXXXXXASSIGLVLKACGLRVTSIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFLDVRLTRDNNVTTGKIYQSVIDKERRGDFLGKTVQVVPHITDAIQEWIERVSLISVDGSEKPADVCVIELGGTVGDIESMPFIEALRQLSYRVGPGNFCXXXXXXXXXXXXXGEQKTKPTQHSVRELRGLGLTPNILACRSAQALEENTKEKLSQFCHVPAGNILTIYDVPNIWHVPLLLRDQKAHEAILKELNLSSVTRSPCLKNWTKRAENFDNLVTPVKIAMVGKYTGLSDAYLSVLKALEHASIECSRKLLVEWVAASDLEDTVAKEAPDVHAAAWKSLMGADGVLVPGGFGDRGVQGKILAAKYAREKKIPYLGICLGMQIAVIEYARSVLGLVGANSTEFDPETSNPCVIFMPEGSKTHMGG
B8LLK6_______________MKYVLVSGGVVSGLGKGVTASGIGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVKLTRNNNITTGKIYQSVIDNERRGNYLGKTVQVIPHITDAIQDWIIDVAGIPVDGKEGPADVCVIELGGTVGDIESMPFIESLRQLSYSVGPENFCLVHVSLVPVIGVVGEQKTKPTQHSVRELRALGLTPHLLVCRSSQPLLENTKEKLSQFCHVPERNILNIYDVSNIWHVPLLLRDQKAHEAILKQLNILSISKAPDLEEWTARAVCYDNLTTPIKIAMVGKYTGLSDSYLSVLKALLHACVACSLKLSVEWVAASDLEDEAAKERPDVYASAWKVLKGAAGVLVPGGFGDRGVQGKILAAKYARENRIPYLGICLGMQIAVIEFARSVLGLEGANSAEFDPETPHPCVIFMPEIRKCFLCG

SNPs (tot: 75)

Position	A %	C %	G %	T %	Probability
16		33		66	0.997452
21		66	33		0.997452
23		66	33		0.997452
25	33	33	33		0.997753
27		33	66		0.997452
30			33	66	0.997452
32		25		75	0.996473
33	75			25	0.996473
35			75	25	0.996473
36		25		75	0.996473
40	75	25			0.996473
327	33		66		0.997452
899	33			66	0.997452
900		33		66	0.997452
901	14	57	28		1.0
902	14	57			1.0
903	57		14	28	1.0
904	57		42		1.0
905	85			14	0.993533
908		14		85	0.993533
921	14	85			0.993533
965	87	12			0.992554
968		12		87	0.992554
970	87		12		0.992554
978	87		12		0.992554
979	87		12		0.992554
980		12	87		0.992554
984		12		87	0.992554
1179	10	90			0.90298
1347	14		85		0.993533
1348	85	14			0.993533
1352	16			83	0.994512
1353		16	83		0.994512
1354	16	83			0.994512
1402	14	85			0.993533
1403	14			85	0.993533
1427	12	87			0.992554
1428	87			12	0.992554
1473	12			87	0.992554
1695	10		90		0.90298
1699	90			10	0.90298
1712		87		12	0.992554
1764	80		20		0.995493
1785		80		20	0.995493
1786		20		60	0.99255
1787			20	80	0.995493
1988		80		20	0.995493
2011	83	16			0.994512
2012	83		16		0.994512
2015			83	16	0.994512
2016		83	16		0.994512
2018		12	87		0.993502
2019		12		87	0.993502
2020			87	12	0.993502
2022	87		12		0.993502
2023	87		12		0.993502
2024	87	12			0.993502
2026		11	88		0.992527
2027			88	11	0.992527
2028		88		11	0.992527
2029	88	11			0.992527
2030		88	11		0.992527
2035	87	12			0.993502
2036	87	12			0.993502
2038			87	12	0.993502
2046	87	12			0.993502
2047	12			87	0.993502
2049	87			12	0.993502
2050	87	12			0.993502
2105	90			9	0.90298
2143	9			90	0.90298
2145		90	9		0.90298
2146		90	9		0.90298
2147	90		9		0.90298
2475	77		22		0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
1909	2037	TGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCT TGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCT TGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCT TGT	129

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain