SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19440

Length: 1352 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19440

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Single bromodomain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T0X0_PHYPA	-	-	3.0e-24	36%
FL-Next	sp=Transcription factor GTE4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	27%
Blast2go	bromodomain protein	-	-	6.54339e-30	49%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LNC4

Fln msg: your sequence is shorter than subject: 347 - 766

Fln protein: VVTLAVTSHKFGSLFKHKLESQNKQQYRNIIRRHMDLGMIRARLEEGSYSGSQEFFRDLLLVFNNALIFYPKSSQEHRAAVVLRELANNEMAKIFETEALLKQEGPSTRKRDPRAIPGPQANATKFNPSSRKRNARPLLVGARAAPRSKTTSRLNVKEEQYNAQEPPKEAIEVSSSAGLKPENEPEDKFEAEAPNRSKMPKAGDERKTSGISIQPKKGSGFHNDPKKNSNTGPKKTTVGNTPLVESRNNSHTHKSNSHSHHHNNNGRSTEQLLGKVAAMKEEKGTPPPEPTHKQRTSDQDQPSPLKRGVGRPPKHVKRASGADDEPPSKATGDPEAASRARKRLRK*

Protein Length: 348

Fln nts: CGTCGTGACCTTGGCTGTCACTTCTCACAAATTTGGATCCCTCTTCAAGCATAAACTTGAGAGCCAGAATAAGCAGCAATACAGGAACATTATCAGGCGACACATGGATTTGGGAATGATAAGGGCAAGATTGGAGGAAGGGTCTTACTCTGGCAGCCAGGAGTTTTTCCGAGATTTGCTTCTGGTTTTCAACAATGCTCTTATATTCTACCCCAAGTCCTCTCAGGAGCACAGAGCTGCGGTGGTGCTTAGAGAATTGGCAAACAATGAGATGGCGAAGATATTCGAGACAGAAGCTTTGCTAAAACAGGAAGGCCCATCCACAAGAAAAAGGGACCCCAGGGCCATTCCGGGGCCCCAAGCCAATGCCACCAAGTTCAATCCTAGCAGCAGAAAGAGAAACGCAAGGCCATTATTAGTTGGGGCAAGAGCTGCACCGAGATCCAAAACCACCAGCAGATTGAACGTTAAGGAAGAACAATACAACGCCCAGGAGCCACCCAAGGAAGCAATTGAAGTATCATCCTCTGCAGGTCTAAAACCTGAGAATGAACCAGAAGACAAATTTGAAGCTGAAGCACCAAATAGATCAAAGATGCCCAAGGCTGGAGATGAAAGAAAAACCTCTGGAATCAGCATTCAACCTAAGAAAGGCTCTGGTTTTCATAACGATCCCAAGAAGAACTCCAACACCGGGCCCAAAAAGACCACGGTCGGCAACACCCCACTGGTTGAGTCGCGGAACAATTCTCATACCCACAAGAGCAACAGTCACAGCCACCACCACAACAACAATGGCCGCAGCACAGAGCAGCTTTTAGGCAAAGTTGCAGCGATGAAGGAAGAGAAGGGCACTCCTCCTCCTGAGCCCACCCACAAGCAACGAACATCAGATCAGGACCAGCCCTCTCCCTTGAAAAGAGGAGTTGGAAGGCCACCTAAGCATGTCAAAAGAGCATCAGGAGCAGATGATGAGCCACCATCAAAGGCCACAGGGGATCCAGAAGCAGCTTCAAGGGCGAGAAAAAGACTCAGAAAATGA___GAGCAACTTCCTGTTTTTGGACATGGATTCGGATTCTGCTCAGACCACCCCAGCTGGACTATTATGTAAATACAGAGAATTTTTGTTTAGTCGAACAGATGGAGATGAAATTCCATGCAGGTAAATTATCTATATATATGCATATATTCTAGGGAAAAAGCTTCCATCTTGTCTGTAAAAATTGTATCCAGTGCGTTTCTGTTGATTGTTCAGCGATTGAATGCTTCCAATTGAGGCAACAATCCCCAAACTGGGCTCTAGATTAGGTTCCTCCCCTGCCTGAACAAAACAAATTCTGGTAGGAGTTATT

Fln Alignment:

Contig19440___HKFGSLFKHKLESQNKQ--QYRNIIRRHMDLGMIRARLEEGSYSGSQEFFRDLLLVFNNALIFYPKSSQEHRAAVVLRELANNEMAKI---------FETEALLKQEGPSTRKRDPRAIPGPQANATKFNPSSRKRNARPLLVGARAAPRSKTTSRLNVKEEQYNAQEPPKEAIEVSSSAGLKP--ENEPEDKFEA
Q9LNC4_______________HKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPREFAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMRFVTGYEMNLPTPTMRSRLGPTMPPPPINVRNTIDRADWSNRQPTTTPGR-TPTSATPSGRTPALKKPKANEPNKRDMTYEEKQKLSGHLQNLPPDKLDA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
414	25			75	0.996473
639	90		10		0.90298
641			10	90	0.90298
642		90		10	0.90298
643	90		10		0.90298
648	88			11	0.923564
649	88		11		0.923564
651	85			14	0.993533
652	85		14		0.993533
653	85			14	0.993533
654		14	71		0.984337
655	14		85		0.993533
659	14			85	0.993533
812	42		57		1.0
979		50		50	1.0
1064	85			14	0.999981

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain