SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19144

Length: 1833 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19144

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9REF8_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	beta-glucosidase 40-like	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	79%
Blast2go	apoplast	GO:0048046	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 1, beta-glucosidase	IPR017736	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT85

Fln msg:

Fln protein: MSKMSAASLFFVVVSVLLCNVLHRSESKCNPKSTVDFSRKNFPPGFVFGTASSAFQYEGAVEEDGRGPSVWDTYSHKIGSILDSSNADIAVDHYHRYREDIGLIVDMGMDAYRFSISWSRIFPDGSGNINEAGVHHYNKFIDALLENGIEPYLTLYHWDLPQALEDAYNGWLSSKIVDDYVNYAETCFEKFGDRVKNWITFNEPHTFTVEGYYRGYFAPGRCTHCAAGNSATEPYMVAHNMLLAHAKTVDIYRTKYKATQGGRIGISLDVVWYEPMSDSPEDIAATQRAQDFQLGWFMDPLFLGDYPTSMRERVGNRLPVFSAQESCRLKGSVDFVGLNHYTTYYATDNATDGSSFPLNDALPDSGAVTLPWRNGRAIGERAWSSWLYIVPWGIRSLMNYIKQRYNNPPVIITENGMDDHNSISIPVEKALNDERRINYHEDYLSNLSAAIREDGCDVRGYFAWSLLDNWEWAIGYTSRFGLYFVDYNHNLTRYPKASVQWFKCFLH*

Protein Length: 509

Fln nts: ATGGGGACGCACATGTTAGTTCCTGAAACTCCAAGTATTGATAACAAAATAGACTCAAAAGCAGGCGTAAAACCAGGGATCTGACTCAGATTGAGGATGCCTTTGGATGTAACAAAGCGGGGACTAAACAAAAAAAAGCACATGGACAAAACTTAAATACAGCAAA_-_ATGTCAAAGATGAGCGCTGCTTCTCTTTTCTTTGTTGTTGTGAGTGTTCTTCTGTGCAATGTACTGCACAGATCGGAATCCAAATGTAATCCAAAGTCGACAGTAGATTTTAGCAGAAAGAATTTTCCCCCTGGATTTGTATTTGGCACGGCCTCCTCAGCATTCCAGTACGAGGGTGCAGTAGAAGAAGATGGGAGAGGACCCAGTGTATGGGATACCTATTCTCATAAAATTGGGAGTATTCTGGATTCCAGCAATGCAGACATTGCAGTCGACCACTATCATCGTTACAGGGAAGATATCGGGCTAATAGTGGATATGGGGATGGATGCTTACAGATTTTCGATCTCCTGGTCACGCATATTTCCCGATGGAAGTGGAAATATTAATGAAGCAGGAGTCCATCATTACAATAAATTCATAGATGCGCTTTTGGAAAACGGAATCGAGCCATATTTGACTCTGTATCACTGGGATCTTCCACAAGCGCTAGAGGATGCCTATAATGGCTGGCTCAGCTCCAAAATTGTAGACGACTATGTGAATTATGCGGAAACATGCTTTGAGAAATTCGGAGATAGAGTTAAAAACTGGATAACTTTCAACGAGCCACATACGTTTACCGTTGAGGGGTACTATAGAGGCTATTTTGCCCCTGGGCGATGCACCCATTGTGCCGCTGGGAATTCGGCCACCGAGCCCTATATGGTTGCCCATAATATGCTTCTTGCTCATGCCAAAACTGTGGACATATACAGGACAAAGTATAAGGCAACGCAAGGCGGAAGAATCGGTATTTCCTTGGATGTCGTGTGGTACGAGCCCATGTCCGATTCTCCTGAAGACATTGCAGCTACACAGAGAGCCCAGGATTTCCAATTGGGATGGTTCATGGATCCGTTGTTTTTGGGCGATTATCCAACGTCAATGAGAGAGAGAGTCGGCAACCGACTACCGGTATTTTCCGCACAAGAGTCGTGTCGCCTAAAAGGGTCTGTGGACTTCGTTGGGTTGAACCATTACACCACCTATTATGCGACGGACAACGCAACAGACGGAAGCTCGTTTCCTCTCAATGATGCGCTTCCCGATTCCGGCGCTGTCACCCTCCCGTGGAGGAATGGGAGAGCCATCGGTGAGAGAGCATGGTCATCTTGGCTTTACATAGTGCCTTGGGGAATCCGGAGTCTCATGAATTACATCAAACAACGTTACAACAACCCTCCAGTCATTATCACGGAAAACGGAATGGATGACCACAACAGTATTTCGATTCCTGTAGAAAAGGCGTTGAACGATGAAAGACGGATAAACTACCATGAAGATTATCTCTCCAACCTTTCTGCGGCTATCAGGGAAGATGGGTGTGATGTGCGCGGGTATTTTGCGTGGTCTCTGTTAGACAACTGGGAGTGGGCAATAGGGTACACTTCCAGATTTGGGCTCTATTTTGTTGACTACAACCATAATCTCACTAGATATCCCAAGGCTTCTGTTCAGTGGTTCAAATGTTTTCTGCACTGA___AAAAGGTGATGCTGGTTGGAAAACAGTGAATTTTATTTTGGATTGTCCTTTAGGTTCCCTCGCTGTGAAACATGTTTGTTTGAATGGTATATTATAGCGTAATTTTATAGTAATATTGAACCCGAGATGTCTTTACTAAAAAG

Fln Alignment:

Contig19144___LHRSESKCNPKSTVDFSRKNFPPGFVFGTASSAFQYEGAVEEDGRGPSVWDTYSHKIGSILDSSNADIAVDHYHRYREDIGLIVDMGMDAYRFSISWSRIFPDGSG-NINEAGVHHYNKFIDALLENGIEPYLTLYHWDLPQALEDAYNGWLSSKIVDDYVNYAETCFEKFGDRVKNWITFNEPHTFTVEGYYRGYFAPGRCTHCA---AGNSATEPYMVAHNMLLAHAKTVDIYRTKYKATQGGRIGISLDVVWYEPMSDSPEDIAATQRAQDFQLGWFMDPLFLGDYPTSMRERVGNRLPVFSAQESCRLKGSVDFVGLNHXXXXXXXXXXXXGSSFPLNDALPDSGAVTLPWRNGRAIGERAWSSWLYIVPWGIRSLMNYIKQRYNNPPVIITENGMDDHNSISIPVEKALNDERRINYHEDYLSNLSAAIREDGCDVRGYFAWSLLDNWEWAIGYTSRFGLYFVDYNHNLTRYPKASVQWFKCFLH
C0PT85_______________LHLQEEES--EDVKEISRDEFPEGFVFGVATSAYQVEGAAKEGGRGPSIWDAFSYTPGKIFDGTNGDVAVDQYHRYKEDVDVIAKMGFDVYRFSISWSRIFPDGFGAEVNKEGIAYYNNLIDTLLQKGIRSSVTLYHWDLPQKLHESMGGWLNREIVNYFAQYAETCFTAIGDRVKHWITLNEPLQTAVNGYATGIFAPGRCSDRSKSPVGDSSTEPYLVAHNQLLAHAVAVDIYRKKFQDKQGGVIGITVDGEGSEPFTDAEGDKEAAQRRLEFQFGWFLDPLYFGDYPAIMRKKVGDRLPQFSPDEVALLLGSVDFVGLNHYTTRYVIPSFQSSE----DEFFVDQDIHRIAEWEGNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALNDTKRVNYFKGYLKSLAKAIRE-GVDVRGYFAWSLIDNFEWSQGYTKRFGLVFVDYKNELKRHPKSSAHWFTSFLH

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
130	33			66	1.0
132	33	66			0.997452
133	66		33		0.997452
134	33	66			0.997452
136	66			33	0.997452
138			66	33	0.997452
139		33	33	33	0.997753
140	33	33	33		0.997753
141		33	33	33	0.997753
142	66	33			0.997452
144	33		66		0.997452
145			33	66	1.0
146	66			33	0.997452
148	66	33			0.997452
149	66			33	0.997452
150	33			66	0.997452
151	33		33	33	0.997753
152		33	66		0.997452
155	66		33		0.997452
157	66			33	0.997452
158	66	33			0.997452
160	66			33	0.997452
161		33		66	1.0
162	66			33	0.997452
163			33	66	0.997452
165	66			33	0.997452
166	33		66		1.0
293		25		75	0.996473
351	25		75		0.996473
512	12		87		0.992554
554		11		88	0.923564
789	75		25		1.0
1033		88		11	0.923564
1096	11			88	0.923564
1207		77	22		0.999999
1233		12		87	0.992554
1286			85	14	0.993533
1287	85			14	0.993533
1290		14	85		0.993533
1292	14		85		0.993533
1294		14	85		0.993533
1296			85	14	0.993533
1297		85		14	0.993533
1327	14			85	0.993533
1329			14	85	0.993533
1330	85		14		0.993533
1331		85	14		0.993533
1334	42		57		1.0
1370		63	36		1.0
1397		60		40	1.0
1503	83		16		0.994512
1528	80		20		0.995493
1529			20	80	0.995493
1547	20		80		0.995493
1563		60		40	1.0
1598	16			83	0.994512
1600		83	16		0.994512
1601		83	16		0.994512
1613		80		20	0.995493
1622			20	80	0.995493
1713	42		57		1.0
1745			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain