SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19073

Length: 436 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene19073
CGTCGTGACCTTGGCTGTCACTCAGTTGTAAAGAAAATTGGAAATGAGATCGATTTAACTCTGGTTGATCTTGAGGGTCTTTTACCTTCGGCAATCATTATGGTTGTTTCTGTCACTGCATCTACCACTAGTGGGAGTGCGGTTGCAGCGAAATTGATGGGTACTGCAGGGGGTCTCTCTTCACTGGCTAAAATGCCAGCTTGTAATGTGCAGCTTCTAGGTGCAAAGAAAAAGAATTTGGCAGGATTTTCAACAGCGACTTCACAGTTTCGTGTTGGATACCTTGAACAAACAGAGATTTTCCAGAGCACGCCACCTGCTTTGAGAATGCGTGCATGTCGATTGTTAGCTGCAAAGTCAACACTTGCAGCTCGGGTGGATTCTACAAGAGGTGACTCTACTGGAAAAACTGGCAGAAACCTAAGAGAGGAAATAC

Ace file of the UniGene sp_v2.0_unigene19073

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula]	-	-	2.0e-33	76%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	92%
Blast2go	u4 u6 small nuclear ribonucleoprotein prp31-like	-	-	1.61149e-41	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain	IPR002687	-	0.0	-
Sma3	NOSIC	IPR012976	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HPN1

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 145 - 509

Fln protein: RRDLGCHSVVKKIGNEIDLTLVDLEGLLPSAIIMVVSVTASTTSGSAVAAKLMGTAGGLSSLAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPALRMRACRLLAAKSTLAARVDSTRGDSTGKTGRNLREEI

Protein Length: 146

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGTAAAGAAAATTGGAAATGAGATCGATTTAACTCTGGTTGATCTTGAGGGTCTTTTACCTTCGGCAATCATTATGGTTGTTTCTGTCACTGCATCTACCACTAGTGGGAGTGCGGTTGCAGCGAAATTGATGGGTACTGCAGGGGGTCTCTCTTCACTGGCTAAAATGCCAGCTTGTAATGTGCAGCTTCTAGGTGCAAAGAAAAAGAATTTGGCAGGATTTTCAACAGCGACTTCACAGTTTCGTGTTGGATACCTTGAACAAACAGAGATTTTCCAGAGCACGCCACCTGCTTTGAGAATGCGTGCATGTCGATTGTTAGCTGCAAAGTCAACACTTGCAGCTCGGGTGGATTCTACAAGAGGTGACTCTACTGGAAAAACTGGCAGAAACCTAAGAGAGGAAATAC

Fln Alignment:

Contig19073___KLMGTAGGLSSLAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPXXXXXXXXXXXXKSTLAARVDSTRGDSTGKTGRNLREEI
F6HPN1_______________KLMGTAGGLTALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPSLRMRACRLLAAKSTLSARVDSTRGDPTGKTGRTLREEI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain