SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19062

Length: 1510 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene19062 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9T062_RICCO	-	-	61%
FL-Next	tr=Cinnamoyl-CoA reductase, putative; Ricinus communis (Castor bean).	-	-	65%
Blast2go	cinnamoyl- reductase	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	0.0	77%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9T062

Fln msg:

Fln protein: MSEVCVTGGTGFIAAYLIRNLLQKGYRVRTTVRNPDNVEKFSYLWDLPGAKERLNIVRADLLEEGSFDAAVDGVDGVFHTASPVLVPYNERLKETLIDPCVKGTINVLRSCSRSSSVKRVVLTSSCSSIRYEYNSLERSPLDESHWSNLDYCEKYNLWYAYAKTIGEKEAWKFAEEQGLNLVVVNPSFVVGPILAPEPTSTLSVLLSIIKGENNKVYPNCTIGFVHIDDVVTAHILAMESPSASGRLICSADVAHWKEIVEMLKNKYPMYPIADKCGTEEGNDIPHTINTSKIKNLGLASFKSIEQMFEDSIKSFERRGLLQNLP*

Protein Length: 327

Fln nts: ATGGGGACATACCTTCTTGTCATACTGTTACAGTGATCTTGTTCAAAGCCACATCTCTTATTTTCTTTGTGATATCTGCAATTTCCAAGCTTTCCGTCAACCTCCCTGAAAAG_-_ATGAGCGAGGTATGCGTGACAGGAGGCACAGGCTTCATAGCTGCTTATCTCATTCGTAATCTTCTCCAGAAAGGTTACAGAGTTCGCACTACAGTTCGCAACCCAGATAATGTGGAGAAGTTTAGTTATCTGTGGGATCTGCCTGGTGCAAAGGAGAGACTCAACATCGTGAGAGCAGATTTGCTAGAGGAGGGCAGTTTTGATGCAGCAGTAGATGGTGTAGATGGGGTATTCCATACTGCATCACCTGTCTTAGTCCCATATAACGAGCGCTTGAAGGAAACCCTTATAGATCCTTGTGTGAAGGGCACTATCAATGTCCTCAGGTCCTGTTCAAGATCATCTTCAGTAAAGCGGGTGGTGCTTACATCCTCCTGCTCATCAATACGATACGAGTATAATAGTTTAGAGCGTTCCCCGCTGGATGAGTCACATTGGAGCAATTTAGATTATTGCGAGAAGTACAATCTCTGGTATGCATATGCAAAAACTATTGGTGAGAAAGAGGCCTGGAAGTTCGCAGAGGAGCAGGGTCTCAATCTAGTCGTGGTGAACCCCTCATTTGTTGTTGGGCCAATTCTAGCCCCTGAACCTACCAGCACTCTTTCGGTACTGCTGAGCATAATTAAGGGAGAAAATAACAAGGTATACCCAAATTGCACGATTGGTTTTGTTCACATAGATGATGTAGTAACAGCACATATTCTGGCCATGGAGTCTCCATCAGCGTCGGGGAGATTAATCTGCTCTGCTGATGTTGCTCATTGGAAAGAAATTGTAGAGATGTTGAAGAACAAATACCCAATGTACCCAATTGCAGACAAATGTGGAACGGAGGAAGGAAATGATATACCTCACACTATCAACACTAGTAAGATTAAAAACTTGGGACTTGCCAGCTTTAAAAGCATAGAGCAGATGTTTGAGGACAGCATTAAAAGTTTTGAAAGGAGGGGCTTGCTGCAGAATCTGCCTTAG___CATCATAGACACAATGGAAGATTTTTCTTTCACTAGTTTGTCTGAGTGATCATGATGTCTCCTACTTTTAATAAACTGGCAGAACAATGTCTTAGTCGCTTTCACTTCAAAGTAATTTTTACTAATGGTGACAATTCCTGGAATCAAGTTAATGTTTGTTTAACCGGTTCTGTTGCTGATAAATGTGAGTTGGGCTTATCTGAATCATTATTCTATGCTTAGTTAATTGTCCCAATCATGAGCAGTTCACTGTACTTTACACAAGAGGGATACTGGCACTGGAAAATTTGTATTTCTGGAGTTATACATTTATGGGTTTCAGATATCCTTAAATGTACCATACTTAGAGCATAATCCAACATATCAGTCACAAATAAACAATTTAAAGATGATATTTGGATATCTTTCCCTAAATGAAG

Fln Alignment:

Contig19062___MSEVCVTGGTGFIAAYLIRNLLQKGYRVRTTVRNPDNVEKFSYLWDLPGAKERLNIVRADLLEEGSFDAAVDGVDGVFHTASPVLVPYNERLKETLIDPCVKGTINXXXXXXXXXXXXXXXXXXSCSSIRYEYNSLERSPLDESHWSNLDYCEKYNLWYAYAKTIGEKEAWKFAEEQGLNLVVVNPSFVVGPILAPEPTSTLSVLLSIIKGENNKVYPNCTIGFVHIDDVVTAHILAMESPSASGRLICSADVAHWKEIVEMLKNKYPMYPIADKCGTEEGNDIPHTINTSKIKNLGLASFKSIEQMFEDSIKSFERRGLL
B9T062_______________MPEYCVTGGTGFIAAYLVKSLLDKGHIVRATVRDPEDDGKVGFLKEFNGAKERLKIMKADLMIEGSFDEAIHGVDGVFHTASPVLVPYDNNVQATLIDPCIKGTLNVLNSCTKSTSVKRVVLTSSCSSIRYRYDVQQVSPLNESHWSDPEYCKRYNLWYAYAKTIGEKEAWRVAEERGIDLVVVNPSFVVGPLLAPQPTSTLLLILAIVKGLRGE-YPNTTVGFVHIDDVVAAHVLAMENSRASGRLVCSSSVAHWSEIIEMLKVKYPSYPHENKCSSQEGDSNPHSMDTSKIAQLGFPPLKTVEHMFDDCIKSFQEKGLL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
273		46		53	1.0
907		9	90		0.999842
908		4		86	0.999642
1055	83		16		0.994512
1110	75			25	0.996473
1133		25		75	0.996473
1134	75	25			0.996473
1135		25		75	0.996473
1172	33	66			0.997452
1198	83		16		0.994512
1257		75		25	0.996473
1485	45	54			1.0
1486		54	45		1.0
1488	45	54			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain