SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18970

Length: 782 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene18970 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipid-transporting ATPase (Fragment) n=1 Tax=Cucumis melo subsp. melo RepID=E5GCB8_CUCME	-	-	80%
FL-Next	sp=Putative phospholipid-transporting ATPase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	aminophospholipid atpase	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	90%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SGG3

Fln msg: Separated hits, possible frame ERROR between 310 and 331, Distance to subject end: 915 aas, your sequence is shorter than subject: 260 - 1228

Fln protein: PLRYPSNYVSTTKYNVITFLPKALFEQFRRVANLYFLLTAALSTTSLSPFKPASVIAPLVFVVGASMLKEAVEDWRRFIQDMKVNARKVSVHKGDGVFGYKSxxxxxxxxGDVVKVEKDNFFPADLLLLSSNFEDGICYVETMNLDGETNLKVKRSLETTLPLDEDNEFKDFRATVKCEDPNPNLYTFVGNFEFERQVYPLGPDQVLLRDSKLRNTQYIYGVVIFSGHDSKVMQNSTESPSKRSSIEQKMDKIIYFLFSL

Protein Length: 261

Fln nts: GCCTTTGAGGTATCCCTCCAATTATGTCTCGACAACCAAGTACAATGTTATCACGTTTCTGCCCAAAGCTCTGTTTGAGCAGTTCCGAAGGGTTGCAAACCTTTATTTTCTCCTTACAGCCGCTCTGTCTACGACATCCCTGTCGCCATTTAAGCCTGCCAGTGTAATTGCGCCCCTGGTTTTTGTGGTAGGGGCAAGTATGCTCAAGGAGGCCGTGGAAGATTGGAGGAGGTTTATTCAGGACATGAAGGTTAATGCCAGGAAAGTGAGTGTCCATAAAGGAGATGGTGTCTTTGGATATAAGTCATGxxxxxxxxxxxxxxxxxxxxxTGGAGATGTGGTTAAGGTAGAGAAAGACAACTTTTTCCCCGCTGATTTACTCCTCCTGTCTTCCAATTTTGAAGATGGCATCTGCTATGTTGAAACCATGAATCTGGATGGAGAAACTAACCTGAAAGTCAAAAGAAGTCTGGAAACGACATTGCCCCTTGATGAAGATAATGAGTTTAAGGACTTCAGAGCAACAGTTAAATGTGAAGATCCTAACCCTAATCTGTATACTTTTGTCGGAAATTTTGAGTTTGAAAGACAGGTTTATCCTCTGGGCCCTGATCAGGTGCTTCTCAGAGATTCAAAGCTCCGGAATACTCAGTACATATATGGAGTTGTGATCTTCAGTGGCCATGACAGCAAAGTGATGCAGAATAGCACGGAATCTCCTTCAAAAAGAAGTAGCATTGAACAAAAGATGGACAAGATAATTTACTTTCTTTTTTCTCTTTT

Fln Alignment:

Contig18970___PLRYPSNYVSTTKYNVITFLPKALFEQFRRVANLYFXXXXXXXXXXXSPFKPASVIAPLVFVVGASMLKEAVEDWRRFIQDMKVNARKVSVHKGDGVFGYKSWxxxxxxxGDVVKVEKDNFFPADLLLLSSNFEDGICYVETMNLDGETNLKVKRSLETTLPLDEDNEFKDFRATVKCEDPNPNLYTFVGNFEFERQVYPLGPDQVLLRDSKLRNTQYIYGVVIFSGHDSKVMQNSTESPSKRSSIEQKMDKIIYFLFSL
Q9SGG3_______________PLRYRSNYVSTTRYNLITFFPKSLYEQFHRAANLYFLVAAILSVFPLSPFNKWSMIAPLVFVVGLSMLKEALEDWRRFMQDVKINARKTCVHKSDGVFRQRKWxxxxxxxGDIVKVEKDEFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEVSLPLDDDESFKNFMATIRCEDPNPNLYTFVGNLEFERQTFPLDPSQILLRDSKLRNTTYVYGVVVFTGFDTKVMQNSTKSPSKRSRIERTMDYIIYTLLVL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
119	33	66			0.997452
696		33		66	0.997452
742	33			66	0.997452
749			33	66	0.997452
750		33		66	0.997452
751		33	66		0.997452
752	33		66		0.997452
753	33			66	0.997452
754			33	66	0.997452
758	33		66		0.997452
759	66	33			0.997452
763	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain