SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18673

Length: 543 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene18673
TGCTTGGATTTGCCTTATGAATTGCCATTCATCAAACAAATAATTCAGAAGCGGGAGGCTAAGATTAAAAGGATTCCTACTACTGTTCTCTACACCGGTCCAGCAACATTCTTGCAGTATCATTTGGAAGGCCTGCAAGAAATAGTAGACTGGGACAAAATGTTGAAACTTCAATGTCCAACGATGGATCATTCTTCAGCTCGCCGGCATCTACAGCCGCTGTATTCATGCGTACAGGGAACGCCAAGTGCTTGGAATTCTTGAACTTCGTTTTAATGAAATTCGGAAACCATGTCCCGTGTCGCTATCCGCTTGATCTATTTGAACGTCTGTGGGCGGTCGATACTGTTGAACGGCTAGGGATCGATCGCCATTTCAAAAAGCAGATCAAGGACGCATTGGATTATGTTTACAGATTGATGAGCAGCCATTGGGACGAAAGAGGCATTGGATGTGGAAGAGAGAATTCTGTCGCTGATATTGATGTTACGGCCACGGGTCTTCGAATCCTGAGACTACATGGGTACAATGTATCCTCAGATG

Ace file of the UniGene sp_v2.0_unigene18673 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Abietadiene synthase, chloroplastic n=1 Tax=Abies grandis RepID=TPSDV_ABIGR	-	-	80%
FL-Next	sp=Levopimaradiene synthase, chloroplastic; Picea abies (Norway spruce) (Picea excelsa).	-	-	73%
Blast2go	a chain structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q675L4

Fln msg: Overlapping hits, possible frame ERROR between 174 and 156, Distance to subject end: 446 aas, your sequence is shorter than subject: 181 - 859

Fln protein: CLDLPYELPFIKQIIQKREAKIKRIPTTVLYTGPATFLQYHLEGLQEIVDWxxxxxxxxSNDGSFFSSPASTAAVFMRTGNAKCLEFLNFVLMKFGNHVPCRYPLDLFERLWAVDTVERLGIDRHFKKQIKDALDYVYRLMSSHWDERGIGCGRENSVADIDVTATGLRILRLHGYNVSSD

Protein Length: 182

Fln nts: TGCTTGGATTTGCCTTATGAATTGCCATTCATCAAACAAATAATTCAGAAGCGGGAGGCTAAGATTAAAAGGATTCCTACTACTGTTCTCTACACCGGTCCAGCAACATTCTTGCAGTATCATTTGGAAGGCCTGCAAGAAATAGTAGACTGGxxxxxxxxxxxxxxxxxxxxxxxxTCCAACGATGGATCATTCTTCAGCTCGCCGGCATCTACAGCCGCTGTATTCATGCGTACAGGGAACGCCAAGTGCTTGGAATTCTTGAACTTCGTTTTAATGAAATTCGGAAACCATGTCCCGTGTCGCTATCCGCTTGATCTATTTGAACGTCTGTGGGCGGTCGATACTGTTGAACGGCTAGGGATCGATCGCCATTTCAAAAAGCAGATCAAGGACGCATTGGATTATGTTTACAGATTGATGAGCAGCCATTGGGACGAAAGAGGCATTGGATGTGGAAGAGAGAATTCTGTCGCTGATATTGATGTTACGGCCACGGGTCTTCGAATCCTGAGACTACATGGGTACAATGTATCCTCAGATG

Fln Alignment:

Contig18673___LDLPYELPFIKQIIQKREAKIKRIPTTVLYTGPATFLQYHLEGLQEIVDWxxxxxxxSNDGSFFSSPASTAAVFMRTGNAKCLEFLNFVLMKFGNHVPCRYPLDLFERLWAVDTVERLGIDRHFKKQIKDALDYVYRLMSSHWDERGIGCGRENSVADIDVTATGLRILRLHGYNVSSD
Q675L4_______________LDLPYELPFIKQIIEKREAKLERLPTNILYALPTTLL-YSLEGLQEIVDWxxxxxxxSKDGSFLSSPASTAAVFMRTGNKKCLEFLNFVLKKFGNHVPCHYPLDLFERLWAVDTIERLGIDRHFKEEIKDALDYVY----SHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSD

SNPs (tot: 4)

Position	C %	G %	T %	Probability
324		80	20	0.995493
325	80		20	0.995493
390	85	14		0.993533
399	14	14	71	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain