SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18630

Length: 1504 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18630

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl:coa ligase n=1 Tax=Populus trichocarpa RepID=B9GQ39_POPTR	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	acyl:coa ligase	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	71%
Blast2go	response to wounding	GO:0009611	Biological Process	71%
Blast2go	catalytic activity	GO:0003824	Molecular Function	71%
Blast2go	peroxisome	GO:0005777	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABX8

Fln msg: Separated hits, possible frame ERROR between 141 and 153, atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning,

Fln protein: RRDLGCHSNPDSTAVVLYSSGTTGRSKGVVSTHRNLIAMTSILCTLxxxxxWLYLCFIPLFHMYGFNTFVCGLMAIGATVVILPKFTMEGMLMAIQRYRVTHLPAVPAIVIRLSKLPDVDQKYDLSSLKEVIVGGASMGREQMEAFRSRFPGIGISQMYGMTEMSGSVIKSERNDIKHYGSVGILVPNVEAKVVDIVTGNPLPPNRRGELCFRGPMVMKGYYKNNEATSSSIDSEGWLHSGDICCINEEGHVYIVDRLKELIKYKGLQIAPAELEELLLSNPEIEDSAVIPYPDEEAGEVPMAFIARKPQSNLTEEDVIEFIGRQVAPYKKIRRVAFVVSIPRTESGKILRKHLRALVEQKTSIPSKL*

Protein Length: 370

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCCGGATTCTACAGCAGTGGTGCTTTATTCATCGGGCACCACAGGCCGGAGCAAAGGGGTGGTATCGACGCACAGAAACCTTATTGCCATGACCTCCATCTTGTGCACTCTTATxxxxxxxxxxxxTTGGCTGTATCTGTGTTTCATTCCGTTGTTTCATATGTATGGCTTCAATACTTTTGTCTGTGGGCTCATGGCAATAGGGGCAACTGTTGTCATTTTGCCCAAATTTACAATGGAGGGAATGCTGATGGCCATTCAGAGATACAGAGTAACGCACCTGCCTGCTGTTCCTGCTATTGTCATTCGGCTCTCCAAGTTGCCCGACGTTGACCAAAAATACGATCTGAGTTCTCTCAAGGAGGTTATAGTAGGTGGGGCGTCCATGGGCAGAGAACAAATGGAAGCCTTCAGGAGCCGTTTCCCTGGAATTGGAATTTCACAGATGTATGGAATGACTGAGATGAGTGGTTCAGTCATAAAGAGCGAAAGAAACGACATCAAGCATTATGGTTCAGTGGGCATACTAGTCCCAAACGTGGAGGCTAAGGTGGTTGATATTGTAACAGGGAATCCCTTGCCTCCCAACAGAAGAGGCGAATTATGCTTCCGAGGCCCTATGGTTATGAAAGGATACTACAAGAACAATGAAGCGACATCATCGTCAATAGATTCAGAAGGCTGGTTGCATTCTGGAGATATTTGTTGTATCAATGAAGAAGGGCATGTATATATCGTAGACAGATTAAAAGAGCTCATCAAATACAAAGGACTCCAGATAGCACCAGCCGAATTGGAAGAGCTTCTGCTGTCCAATCCAGAGATTGAAGACTCTGCAGTAATACCATACCCAGATGAAGAAGCAGGTGAAGTTCCTATGGCATTTATAGCGAGGAAGCCTCAAAGCAATCTAACAGAAGAGGATGTGATTGAATTTATTGGAAGACAGGTGGCTCCATACAAGAAGATAAGAAGAGTGGCGTTTGTGGTTTCCATTCCGCGAACTGAGTCTGGAAAAATTCTCAGAAAACATCTGAGAGCACTGGTTGAGCAAAAAACTTCAATCCCTTCAAAGCTGTGAACTATCTGACTTGCATCTTCAACAATAAATTTAATATTTCTTCCATGAAATCAACTAGGTTTGTTTGTCATGGGCTTCATCACCGAGAGTTCCAACCATCTTGAAAGGAGAGTAACTTATTTTATATCCAGCAAACCTGATGGCTGTGAAGTCAAAATTTTCAGCCTTACGTCAGGTGACAAATTCAATTGTCAATTATTTTTGTTGAACACCCCGTTTCTCTCTGAATAACTCTCTTTCACTTGAATTTCCTACGACTTTAGTTTGATGAAGATGATGGTAGAATGGATCAAATTGCGATAATTCAAGATTTTACCTGCTTAAACaTCAATTAAGCAGGTAACTTTATTTAGTTATCTTCAAACTTCATCGAATATATGATATATGAAATATAATGA

Fln Alignment:

Contig18630___DSTAVVLYSSGTTGRSKGVVSTHRNLIAMTSILCTLMxxxxWLYLCFIPLFHMYGFNTFVCGLMAIGATVVILPKFTMEGMLMAIQRYRVTHLPAVPAIVIRLSKLPDVDQKYDLSSLKEVIVGGASMGREQMEAFRSRFPGIGISQMYGMTEMSGSVIKSERND-IKHYGSVGILVPNVEAKVVDIVTGNPLPPNRRGELCFRGPMVMKGYYKNNEATSSSIDSEGWLHSGDICCINEEGHVYIVDRLKELIKYKGLQIAPAELEELLLSNPEIEDSAVIPYPDEEAGEVPMAFIARKPQSNLTEEDVIEFIGRQVAPYKKIRRVAFVVSIPRTESGKILRKHLRALVEQK
D5ABX8_______________DDTATLLYSSGTTGTSKGVISTHRNLI---SVLCIFLxxxxYLYLCTVPMFHVYGLSAFACGLLGSGSTIVVLSKFDVMEMLAAVEKYRVTYLPIVPPILLALTKT-DIARKYDLRSLHTVICGGAPLSKESAEEFVARFPSVSLLQGYGLTETTGRGASTENEEESRHYGSVGMLTPNIEAKIVDPDSITPLPPNKKGELWLRGPVVMKGYFNNPEATASALDKDGWLRTGDLCYIDDNGYLFVVDRLKELIKYKGYQVAPAELEALLLSHPEIAEAAVIPFEDREAGQVPMAYIVRKPGSTLYETNVTDFVAQQVAPYKKVRRVAFVSEIPKTAAGKTLRKDLIKLATSK

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
460	50	50			1.0
478	50		50		1.0
498	50		50		1.0
517		40		60	1.0
521	20		80		0.995493
523	80		20		0.995493
541		40		60	1.0
550	40		60		1.0
565	75			25	0.996473
568		75		25	0.996473
583	25		75		0.996473
598	75		25		0.996473
604			20	80	0.995493
681		20	80		0.995493
683	80			20	0.995493
684			80	20	0.995493
760	14		85		0.993533
761		14		85	0.993533
768		66		33	1.0
778		33		66	1.0
801	44		55		1.0
804	55		44		1.0
807		88		11	0.923564
822		77		22	0.999999
844		11		88	0.923564
845		33	66		1.0
853		22	77		0.999999
855	33		66		1.0
882		88		11	0.923564
884		88		11	0.923564
885	55		44		1.0
897	46		53		1.0
934		63	36		1.0
935	72	27			1.0
953	50		41	8	1.0
963			25	75	1.0
970	72		27		1.0
975	72	27			1.0
990	76	23			1.0
1011	23		76		1.0
1032		18	81		0.999994
1038		18		81	0.999994
1074	83		16		0.994512
1077		16	83		0.994512
1080		16		83	0.994512
1085	80	20			0.995493
1120		14		85	0.993533
1122	85			14	0.993533
1124			14	85	0.993533
1129		14		85	0.993533
1134	85		14		0.993533
1135	85		14		0.993533
1137	85			14	0.993533
1138	85		14		0.993533
1140	85	14			0.993533
1142	85	14			0.993533
1144		16		83	0.994512
1145	16			83	0.994512
1335			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain