SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18599

Length: 563 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene18599
CGTCGTGACCTTGGCTGTCACTCAGGTTTCAAGGGCCCTCTATCAGGCTCATCTTTAGTATCGATCGTTGTAGTGGGTTTGCGTTCCTTCATTCAATTTGATGTTGGGGCTCTGGGGCTTTCTGTTTTTCTGAACTTCCCAATTTCGCTTTATCAATGGGTGATGATTCTGCAAACGAGCGCGTGAATTATACACAGGAGCAAATGCAATTAGTGACGGAAATCACAAGCAATGAAGATTATTACATCATACTGGGAATTGAGAAGGATTCTCCTGTCGAGGAAATTCGCAAGGCCTACAGGAAATTATCATTGAAGATCCATCCAGACAAGAACAATGCTCCTGGTGCAGAGGAAGCTTTCAAGGCACTGTCCAATGCATTCCAGTGTCTAAACAACGACGAAACGAGGAGAAAATATGATCATGGTGATGATAGCAATGAGTTCGATTCCCCCAATTGTGAGAGACTCAATTTCCTGGTCCTTCTGCAGACATTACCCATGCTTCTACTTCTCCTGGTGAGCTATTTTCCGTCCTACGAGCCTAATTATTCGTTGCAGAAG

Ace file of the UniGene sp_v2.0_unigene18599

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ-like protein n=3 Tax=Arabidopsis RepID=Q8VZB6_ARATH	-	-	1.0e-25	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	dnaj-like protein	-	-	3.85609e-32	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	3.85609e-32	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.85609e-32	77%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Domain of unknown function DUF1977, DnaJ-like	IPR015399	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV01

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 145 aas, your sequence is shorter than subject: 187 - 361

Fln protein: S*PWLSLRFQGPSIRLIFSIDRCSGFAFLHSI*CWGSGAFCFSELPNFALSMGDDSANERVNYTQEQMQLVTEITSNEDYYIILGIEKDSPVEEIRKAYRKLSLKIHPDKNNAPGAEEAFKALSNAFQCLNNDETRRKYDHGDDSNEFDSPNCERLNFLVLLQTLPMLLLLLVSYFPSYEPNYSLQK

Protein Length: 188

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTCAAGGGCCCTCTATCAGGCTCATCTTTAGTATCGATCGTTGTAGTGGGTTTGCGTTCCTTCATTCAATTTGATGTTGGGGCTCTGGGGCTTTCTGTTTTTCTGAACTTCCCAATTTCGCTTTATCAATGGGTGATGATTCTGCAAACGAGCGCGTGAATTATACACAGGAGCAAATGCAATTAGTGACGGAAATCACAAGCAATGAAGATTATTACATCATACTGGGAATTGAGAAGGATTCTCCTGTCGAGGAAATTCGCAAGGCCTACAGGAAATTATCATTGAAGATCCATCCAGACAAGAACAATGCTCCTGGTGCAGAGGAAGCTTTCAAGGCACTGTCCAATGCATTCCAGTGTCTAAACAACGACGAAACGAGGAGAAAATATGATCATGGTGATGATAGCAATGAGTTCGATTCCCCCAATTGTGAGAGACTCAATTTCCTGGTCCTTCTGCAGACATTACCCATGCTTCTACTTCTCCTGGTGAGCTATTTTCCGTCCTACGAGCCTAATTATTCGTTGCAGAAG

Fln Alignment:

Contig18599___ALSMGD-DSANERV--NYTQEQMQLVTEITSNEDYYIILGIEKDSPVEEIRKAYRKLSLKIHPDKNNAPGAEEAFKALSNAFQCLNNDETRRKYDHGDDSNEFD
A9NV01_______________AAKMSDISSGNSRGARNYTDEQVEIVRLIKRNKDYYVILGLEKNCSVEDVRKAYRKLSLRVHPDKNKAPGSEEAFKAVSKAFQCLSNEEMRRKYDLTGPDEDFE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
105		25		75	0.996473
456	66		33		0.997452
457	66		33		0.997452
462		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain