SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18166

Length: 2798 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene18166
TTGCTGTCGTGACCTTGTCTTCACTCTATTTCGGTTCGATCCGAAGAATGGCAGATGGGAGGTCTCACAGTCTCCACTTGTCTAGGAATTTACCTGATATAATTTTCCTTCGTAACTACTGATAATTTCGTATCACATTTACGCGGCTCCATTCTCTTTATTAAATTTAACGTTCAAGTCCCTTTCCTAGCGACTTAATTACATATATGTTTCAATCTCGGGAATTTCATTGTATGAAGTTTCCTTAGCTTTGAAATTCGCAGGATAGCTACATATCTGTGCTCTGAAGACGTACAGGGCTTTGGTGTTTAGAAGAATTCGAGAATTTGCATGTGAGAATCTCTGTATATTATACGACAATGGCAACAGACTCGGCTCGGGAAAGCACCGAGGAAGAAAATGGTTTTACTCAGCCCGAAATAGGAGATGACGATATTGATAACGTAGCAGAAGATTTCAAAGATGGATTAGGGTTAGTGAGCCTGAAAGAGAAATCCATGGAGGAGAGAACTAATGGAACCCTTGATCCCCACAATGATAACGATGGCGAAGGTAGGATTGGAATCGTTGACGAGAATGGGAATGCCGATGATAGCCCAAGGATTGACGTTGAGGATGGGCAGTCCGATAGCAATCGACAAATTGCAGAATTTAGCCCGGAGGGGCATCAGGAAATTTCAGAGACAGGTGAACATTTGGAGGATGATTTTTCAGAACAGGAAATTGAGGTTGAAGTTCCCACTAGTCCCAGCAGCAGTGGATACGCAGGTGGCAGAGGCAGTAGCAGCGCTGCTAGCCTTGGCAGTGCCAGTGGATCAGAGGAGATTAGGGGACGCTTTGCGAAGCGGAGATGGAGTTACAGAGTGTTTTGGCAATGGCGATAAGGAGCTCCGAGGGCGAGCGGGTTGGGCACATGTCCAGCGGTATAAAATGAGGATGAGACAGCAATTTCTTGGAGGAAGAGAAAGAAGCACTTCTTTGTACTTAGTAATTCTGGGAAGCCAATTTACTCCAGATATGGAGATGAGCATAAGCTAGCAGGATTTTCGGCAACCTTGCAAGCAATCGTTTCTTTTGTGGAGAATGGTGGAGACTGCATAAAACTGGTGCGGGCAGGCAACCATCAGATTATTTTTCTAGTCAAGGGTCCTATCTATTTGGTCTGTATAAGCTGCACAGAAGAGCCATTTCAAGCTTTGAAAGGGCAGCTAGAGCTTCTTTATGACCAGATGTTGCTTATTTTGACAAAGTCAATAGATAAATGCTTTGAAAAAAATTCAAAGTTTGACATGACACCATTACTTGGAGGCACAGATGTAGTTTTCTCCTCTCTGATACACGCCTTCAGTTGGAATCCGGCAACATATTTGCATGCATATACCTGCCTTCCCCTGCGACACTCCACAAGACAAGCTGCAGGAGCTATTCTTCAAGATATAGCGGATTCTGGTGTCTTATTTGCTATTCTCATGTGCAGATACAAGGTTATCAGCCTTTTTGGGGCACAAAAGGCAGTCCTTCATCCGGATGACATGCTTTTACTTTCAAATTTTGTTTTATCATCAGAATCTTTCAGGACATCAGAATCATTTTCTCCTATTTGCCTGCCACAATTCAATCCAATGGCATTCCTTTATGCATATGTGCAATACCTTGAAGTAGATACCTACTTGATGTTGCTCACAACTGATTCTGATTCCTTCTTCCATCTGAAGGAATGCAGGATTCGTATTGAAAATGTACTGGTCAAATCAAATGTCCTCAGTGAGGTTCAGAGGTCAATGCTAGATGGTGGTCTACGTGTGGAGGACCTACCTGGTGATCCTACATTGCCTTCAGATTTTGTCACTTTTCGTTTACGTAAGGATAAGAGCTTGCAGGGAGCTGGTTCTTCTACAGGAACTGGAAGAAATAATGGAGTTGGAGGTCCAGCTGGGCTTTGGCATTTTATGTACCGTAGTAACTATCTCGATCAATATGTGGCTTCAGAGTTTTCACCACCCATAAATAGCCGCAATGCACAGAAAAGGCTATTCAGAGCTTATCAGAAGTTGCATACCTCAATGCAAGATAAGGATGTAGGGCCTCATAAGATGCAGTACAGGAAGGATGAAAACTATGTTTTATTATGCTGGATTACTCAGGAATTTGAGCTTTATGCAGCTTTTGATCCACTGGCTGAAAAGAGTTCAGCAATAACGGTTTGTAATCGTGTTTGCCAATGGCTGAGGGATGTGGAAAATGAGATATTTCTACTGGAGGCGAGTCCACTTTCTTGGTGAATCGTACCAAGTGTACAGCTATAGTTGAAACTGAGCTTGAATTCAGATTCTTTGAAAAAAAAAATTTTGAAATTAGAAAAAATTGTTAATTATCATTTTTATTGACAAACCAAGTTCCTTATATAACAAGGCATCATCACTGAGTTGATGTCAGAAGGCAATGTATGTTGGTTCTGCATTGTTACTTTTCTTATAAAATATATGTACAGCTCCCTCAAGAGGAATCTCTGGCAATTCTGTCAGGTAAAGACAATTTGCGTGTTTATAGGTACATATTGTCAAATATTTGCTTAGGAGTCTTGTGGTCTAGACATGACAATTGAAACGTGTTATGTTTTTCTCCCTCTCTTTTCATCCTTTCTAAAGTTTTTAGCAGGAGAAAAAAACTGTAACTGAAATGGAGCATTGCTGGTGGAATATTATTTTTCCTCTTCTTCCAGAAAACTCGTGGTTGGTATTATCGTTTGTATTCGTACTGTCAATATTGAATGTTAAGAGAACGTACAGATATAGGAA

Ace file of the UniGene sp_v2.0_unigene18166

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SAND family protein [Arabidopsis thaliana] gb\|AAL10492.1\| At2g28390/T1B3.9 [Arabidopsis thaliana] gb\|AAD20687.2\| expressed protein [Arabidopsis thaliana] gb\|AAM91354.1\| At2g28390/T1B3.9 [Arabidopsis thaliana] dbj\|BAC42668.1\| unknown protein [Arabidopsis t	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	sand family protein	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vacuolar fusion protein MON1	IPR004353	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS8

Fln msg: your sequence is shorter than subject: 641 - 670

Fln protein: MATDSARESTEEENGFTQPEIGDDDIDNVAEDFKDGLGLVSLKEKSMEERTNGTLDPHNDNDGEGRIGIVDENGNADDSPRIDVEDGQSDSNRQIAEFSPEGHQEISETGEHLEDDFSEQEIEVEVPTSPSSSGYAGGRGSSSAASLGSASGSEEIRGRFAKRRWSYRVFWQWR*GAPRASGLGTCPAV*NEDETAISWRKRKKHFFVLSNSGKPIYSRYGDEHKLAGFSATLQAIVSFVENGGDCIKLVRAGNHQIIFLVKGPIYLVCISCTEEPFQALKGQLELLYDQMLLILTKSIDKCFEKNSKFDMTPLLGGTDVVFSSLIHAFSWNPATYLHAYTCLPLRHSTRQAAGAILQDIADSGVLFAILMCRYKVISLFGAQKAVLHPDDMLLLSNFVLSSESFRTSESFSPICLPQFNPMAFLYAYVQYLEVDTYLMLLTTDSDSFFHLKECRIRIENVLVKSNVLSEVQRSMLDGGLRVEDLPGDPTLPSDFVTFRLRKDKSLQGAGSSTGTGRNNGVGGPAGLWHFMYRSNYLDQYVASEFSPPINSRNAQKRLFRAYQKLHTSMQDKDVGPHKMQYRKDENYVLLCWITQEFELYAAFDPLAEKSSAITVCNRVCQWLRDVENEIFLLEASPLSW*

Protein Length: 642

Fln nts: TTGCTGTCGTGACCTTGTCTTCACTCTATTTCGGTTCGATCCGAAGAATGGCAGATGGGAGGTCTCACAGTCTCCACTTGTCTAGGAATTTACCTGATATAATTTTCCTTCGTAACTACTGATAATTTCGTATCACATTTACGCGGCTCCATTCTCTTTATTAAATTTAACGTTCAAGTCCCTTTCCTAGCGACTTAATTACATATATGTTTCAATCTCGGGAATTTCATTGTATGAAGTTTCCTTAGCTTTGAAATTCGCAGGATAGCTACATATCTGTGCTCTGAAGACGTACAGGGCTTTGGTGTTTAGAAGAATTCGAGAATTTGCATGTGAGAATCTCTGTATATTATACGACA_-_ATGGCAACAGACTCGGCTCGGGAAAGCACCGAGGAAGAAAATGGTTTTACTCAGCCCGAAATAGGAGATGACGATATTGATAACGTAGCAGAAGATTTCAAAGATGGATTAGGGTTAGTGAGCCTGAAAGAGAAATCCATGGAGGAGAGAACTAATGGAACCCTTGATCCCCACAATGATAACGATGGCGAAGGTAGGATTGGAATCGTTGACGAGAATGGGAATGCCGATGATAGCCCAAGGATTGACGTTGAGGATGGGCAGTCCGATAGCAATCGACAAATTGCAGAATTTAGCCCGGAGGGGCATCAGGAAATTTCAGAGACAGGTGAACATTTGGAGGATGATTTTTCAGAACAGGAAATTGAGGTTGAAGTTCCCACTAGTCCCAGCAGCAGTGGATACGCAGGTGGCAGAGGCAGTAGCAGCGCTGCTAGCCTTGGCAGTGCCAGTGGATCAGAGGAGATTAGGGGACGCTTTGCGAAGCGGAGATGGAGTTACAGAGTGTTTTGGCAATGGCGATAAGGAGCTCCGAGGGCGAGCGGGTTGGGCACATGTCCAGCGGTATAAAATGAGGATGAGACAGCAATTTCTTGGAGGAAGAGAAAGAAGCACTTCTTTGTACTTAGTAATTCTGGGAAGCCAATTTACTCCAGATATGGAGATGAGCATAAGCTAGCAGGATTTTCGGCAACCTTGCAAGCAATCGTTTCTTTTGTGGAGAATGGTGGAGACTGCATAAAACTGGTGCGGGCAGGCAACCATCAGATTATTTTTCTAGTCAAGGGTCCTATCTATTTGGTCTGTATAAGCTGCACAGAAGAGCCATTTCAAGCTTTGAAAGGGCAGCTAGAGCTTCTTTATGACCAGATGTTGCTTATTTTGACAAAGTCAATAGATAAATGCTTTGAAAAAAATTCAAAGTTTGACATGACACCATTACTTGGAGGCACAGATGTAGTTTTCTCCTCTCTGATACACGCCTTCAGTTGGAATCCGGCAACATATTTGCATGCATATACCTGCCTTCCCCTGCGACACTCCACAAGACAAGCTGCAGGAGCTATTCTTCAAGATATAGCGGATTCTGGTGTCTTATTTGCTATTCTCATGTGCAGATACAAGGTTATCAGCCTTTTTGGGGCACAAAAGGCAGTCCTTCATCCGGATGACATGCTTTTACTTTCAAATTTTGTTTTATCATCAGAATCTTTCAGGACATCAGAATCATTTTCTCCTATTTGCCTGCCACAATTCAATCCAATGGCATTCCTTTATGCATATGTGCAATACCTTGAAGTAGATACCTACTTGATGTTGCTCACAACTGATTCTGATTCCTTCTTCCATCTGAAGGAATGCAGGATTCGTATTGAAAATGTACTGGTCAAATCAAATGTCCTCAGTGAGGTTCAGAGGTCAATGCTAGATGGTGGTCTACGTGTGGAGGACCTACCTGGTGATCCTACATTGCCTTCAGATTTTGTCACTTTTCGTTTACGTAAGGATAAGAGCTTGCAGGGAGCTGGTTCTTCTACAGGAACTGGAAGAAATAATGGAGTTGGAGGTCCAGCTGGGCTTTGGCATTTTATGTACCGTAGTAACTATCTCGATCAATATGTGGCTTCAGAGTTTTCACCACCCATAAATAGCCGCAATGCACAGAAAAGGCTATTCAGAGCTTATCAGAAGTTGCATACCTCAATGCAAGATAAGGATGTAGGGCCTCATAAGATGCAGTACAGGAAGGATGAAAACTATGTTTTATTATGCTGGATTACTCAGGAATTTGAGCTTTATGCAGCTTTTGATCCACTGGCTGAAAAGAGTTCAGCAATAACGGTTTGTAATCGTGTTTGCCAATGGCTGAGGGATGTGGAAAATGAGATATTTCTACTGGAGGCGAGTCCACTTTCTTGGTGA___ATCGTACCAAGTGTACAGCTATAGTTGAAACTGAGCTTGAATTCAGATTCTTTGAAAAAAAAAATTTTGAAATTAGAAAAAATTGTTAATTATCATTTTTATTGACAAACCAAGTTCCTTATATAACAAGGCATCATCACTGAGTTGATGTCAGAAGGCAATGTATGTTGGTTCTGCATTGTTACTTTTCTTATAAAATATATGTACAGCTCCCTCAAGAGGAATCTCTGGCAATTCTGTCAGGTAAAGACAATTTGCGTGTTTATAGGTACATATTGTCAAATATTTGCTTAGGAGTCTTGTGGTCTAGACATGACAATTGAAACGTGTTATGTTTTTCTCCCTCTCTTTTCATCCTTTCTAAAGTTTTTAGCAGGAGAAAAAAACTGTAACTGAAATGGAGCATTGCTGGTGGAATATTATTTTTCCTCTTCTTCCAGAAAACTCGTGGTTGGTATTATCGTTTGTATTCGTACTGTCAATATTGAATaTTAAGAGAACGTACAGATATAGGAA

Fln Alignment:

Contig18166___MATDSARESTEEENGFTQPEIGDDDIDNVAEDFKDGLGLVSLKEKSMEERTNGTLDPHNDNDGEGRIGIVDENGNADDSPRIDVEDGQSDS------------------------NRQIAEFSPE------GHQEISETGEHLEDDFSEQEIEVEVPTXXXXXXXXXXXXXXXXXXXXXXXXXEEIRGR----------FAKRRWSYRVFWQWR*GAPRASGLGTCPAV*NEDETAISWRKRKKHFFVLSNSGKPIYSRYGDEHKLAGFSATLQAIVSFVENGGDCIKLVRAGNHQIIFLVKGPIYLVCISCTEEPFQALKGQLELLYDQMLLILTKSIDKCFEKNSKFDMTPLLGGTDVVFSSLIHAFSWNPATYLHAYTCLPLRHSTRQAAGAILQDIADSGVLFAILMCRYKVISLFGAQKAVLHPDDMLLLSNFVLXXXXXXXXXXXXPICLPQFNPMAFLYAYVQYLEVDTYLMLLTTDSDSFFHLKECRIRIENVLVKSNVLSEVQRSMLDGGLRVEDLPGDPTLPSDFVTFRLRKDKSLQGAGSSTGTGRNNGVGGPAGLWHFMYRSNYLDQYVASEFSPPINSRNAQKRLFRAYQKLHTSMQDKDVGPHKMQYRKDENYVLLCWITQEFELYAAFDPLAEKSSAITVCNRVCQWLRDVENEIFLLEASPLSW
B8LKS8_______________METDSARESGEEENGFTQPEIGDDDIDNVAEDFRDGLGLLSPKEKTMEERRNGTLDSDNDSDDNSRIRTVDENGNADDSSRIEVEEGQSDSSRIEVEEGQSDSSRIEVEEGQADSNRQIAEFSSENNNFVEGHKEISEAREHLEDDFSEQEIEVEAPTSPSSSGYAGGRGSSSAASIGSASGSEEIRDALRSGDGVTECFGNGNGEHRGQASWAHGKRYS----------NEDETSISWRKRKKHFFVLSHSGKPIYSRYGDEHKLAGFSATLQAIVSFVENGGDHIKLVRAGNHQIIFLVKGPIYLVCISCTEEPFQALKGQLELLYDQMLLILTKSIDKCFEKNSKFDMTPLLGGTDVVFSSLIHAFSWNPATYLHAYTCLPLRHSTRQAAGAILQDVADSGVLFAILMCRHKVISLFGAQKAILHPDDMLLLSNFVLSSESFRTSESFSPICLPQFNPMAFLYAYVQYLGVDTYLMLLTTDSDSFFHLKECRIRIENVLVKSNVLSEVQRSMLDGCLRVEDLPGDPTLPSDSLSFRLRRDKNLQVAGSSTGTGRNTGIGGPAGLWHFMYRSNYLDQYVASEFSPPINSRNAQKRLFRAYQKLHTSMHDKDVGPHKMQYRKDENYVLLCWITQEFELYAAFDPLAEKSSAITVCNRVCQWLRDVESEIFLLEASPLSW

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
642			88	11	0.923564
1065		83		16	0.994512
1077	20			80	0.995493
1079	20			80	0.995493
1218	16		83		0.994512
1219	83			16	0.994512
1581	33	66			0.997452
1583			66	33	0.997452
1585	66			33	0.997452
1854		11		88	0.923564
1855		88		11	0.923564
1913	10		90		0.90298
1959	14			85	0.993533
1984	62		37		1.0
2031	75			25	1.0
2032		12	87		0.992554
2034	87	12			0.992554
2035	87			12	0.992554
2036	87	12			0.992554
2037	12		87		0.992554
2089	90			10	0.90298
2091	10		90		0.90298
2096	10	90			0.90298
2102	90		10		0.90298
2273	90			10	0.90298
2276	10	90			0.90298
2282			10	90	0.90298
2283		90	10		0.90298
2285		10		90	0.90298
2287	10		90		0.90298
2289			90	10	0.90298
2290	90	10			0.90298
2292		10		90	0.90298
2351	33			66	0.997452
2352	66			33	0.997452
2373		16		83	0.994512
2375		16	83		0.994512
2376	16			83	0.994512
2405	14			85	0.993533
2407		85	14		0.993533
2408		85	14		0.993533
2409			14	85	0.993533
2423	87		12		0.992554
2426	87		12		0.992554
2428		87	12		0.992554
2432			87	12	0.992554
2433	87		12		0.992554
2435		12		87	0.992554
2438	87			12	0.992554
2439		12		87	0.992554
2440	12		87		0.992554
2468	87		12		0.992554
2470		12		87	0.992554
2473			12	87	0.992554
2476		12		87	0.992554
2479			12	87	0.992554
2509			90	10	0.90298
2674	75	25			0.996473
2676	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain