SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17616

Length: 1668 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17616 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L4 n=1 Tax=Prunus armeniaca RepID=RL4_PRUAR	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	60s ribosomal protein l4-1	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%
Blast2go	cell wall	GO:0005618	Cellular Component	86%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	86%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L4/L1e	IPR002136	-	0.0	-
Sma3	Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site	IPR013000	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK49

Fln msg:

Fln protein: MAATAAARPLVSVLNVESEGAEGGSDAVPLPDVMKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYILRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSVFGGFEKESLQKKGYVLPRAKMVNSDLGRIVNSDEIQSVVKPINREIKRKPLKKNPLKNLGALLKLNPHAKTARRMALLAEEQRAKAKKEKLDKKRKEPKENKDEIKAAGKAWYKTMVSDSDYTEFENFSKWLGVTQ*

Protein Length: 408

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACTCTATTGGAGAAACCCTACCAGTTTGTTTTATTCATATAGCAGAGTTTCTGCACCGAGGGTTTTGGACAGAAGAAACCTTCCATCTTAGCTTTTAGGTTTTCATTCACCATTACCATTAGCAGAGCATCA_-_ATGGCGGCCACTGCAGCAGCTCGTCCTCTGGTTTCAGTGCTAAATGTTGAAAGCGAAGGCGCAGAAGGGGGCAGCGATGCCGTTCCCCTTCCGGACGTGATGAAGGCGTGCATCAGGCCCGACATTGTCGAATTCGTGCACGCAAACATGGCAAAAAATAAACGCCAACCTTACGCAGTCAGCAAGAAGGCCGGTCATCAGACTTCCGCAGAGTCATGGGGAACGGGGCGGGCGGTTTCCCGAATCCCCCGTGTTGCTGGAGGCGGAACGCACAGAGCTGGCCAGGGAGCCTTTGGCAACATGTGTCGTGGCGGACGGATGTTCGCTCCCACGAAAATCTGGCGAAAATGGCACCGGAAAATCAACTTAAACCAGAAAAGACATGCGGTGGTTTCTGCCCTAGCGGCCTCTGCGATCCCCGCCCTTGTCATGGCTCGAGGTCACAGGATCGAGTCCGTCCCCGAGCTGCCGCTGGTTCTCAGCGATGGCGTCGAAGGGGTAGAGAAAACCTCAGCTGCTTTGAAGGTTTTGAAGAAGGTGGGAGCTTTTGCTGACGTCGAAAAGGCCAAGAAAAGTCACAGTATTCGTGCCGGTAAGGGTAAGATGAGGAACAGGCGTTATATTTTACGCAAAGGTCCTCTGATTGTTTATGCCACTGAAGGGGCCAAGCTTGTCAAGGCTTTCAGGAATATTCCAGGTGTGGAAATTGCTTGTGTCGATAGATTGAATCTGCTGAAGCTTGCTCCTGGAGGGCATTTGGGTCGTTTTATTATTTGGACAAAGTCTGCTTTTGAGAAGCTTGATAGCGTTTTCGGGGGTTTTGAAAAGGAGTCCCTGCAAAAGAAGGGATACGTTCTACCTCGTGCGAAGATGGTCAATTCGGATCTGGGTAGGATTGTGAATTCTGATGAAATTCAGTCTGTTGTGAAACCCATCAACAGGGAAATCAAGCGGAAGCCGCTCAAGAAGAATCCACTTAAGAACTTGGGTGCTCTTCTGAAGCTCAACCCACATGCGAAAACTGCCAGGCGAATGGCACTTTTGGCTGAGGAACAGCGTGCGAAGGCCAAGAAGGAGAAGCTTGACAAGAAGAGAAAGGAACCAAAGGAAAACAAGGATGAAATAAAGGCAGCGGGAAAAGCTTGGTACAAAACCATGGTTTCAGATAGTGACTACACGGAGTTTGAGAATTTCTCTAAATGGCTTGGCGTGACACAGTAA___AGCAAGTTGGTCCATAAGAAAATGAATTTTATCATTAGTTGAAATCAAGGCTAGTCTTTGGGTTATGAGTAATTACGCTGGTAATCTAAATTTTGTTTCTGACAATTACAGTAGAGTTTGCCTTGTGATTTTGAATTTTTGTGGCCTAATATTTTTCAATTTTAACATTCTATTTTGACGGTGAGCCAACCATTTTGTAGTTGCTATGTTCTGTAGTGTCAGGTCCTTGGTGTTTATGACTATTTATGATAAACAAAACAGTGGCTGAGATCCTTGCCAACTTTTTAGA

Fln Alignment:

Contig17616___PLVSVLNVESEGAEGGSDAVPLPDVMKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYILRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSVFGGFEKESLQKKGYVLPRAKMVNSDLGRIVNSDEIQSVVKPINREIXXXXXXXXXXXXXXXXXXXXPHAKTARRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKAAGKAWYKTMVSDSDYTEFENFSKWLGVTQ
B8LK49_______________PLVSVQNVESEGAEGGSDAVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSTFGGFEKESLQKKGYVLPRAKMVNSDLARIVNSDEIQSVVRPINREIKRKPLKKNPLKNLGALLKLNPHAKTARRMALLADEQRAKAKQEKLDKKRKEPKENKDAIKAAGKAWYKTMVSDSDYTEFENFSKWLGVTQ

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
451	4		95		0.997218
633	83		16		0.999991
641		27	9	63	1.0
643	10	20		70	0.999998
644	10			90	0.90298
645		87	12		0.992554
652		25	75		0.996473
1210	75		25		0.996473
1218	25		75		0.996473
1294		88		11	0.923564
1559			2	97	0.907451
1562	97		2		0.907451
1563	97			2	0.910981
1565	2	3	94		0.992019
1566		3		96	0.999856
1567	3	1		95	0.998934
1571	3			95	0.999088
1572	2	97			0.924243
1575	2			97	0.930363
1579	93	4	1		0.999999
1580	92	4	1	1	0.999999
1581	97	2			0.949185
1582	5	89	1	2	1.0
1584	4	90	1		0.999993
1585	3			96	0.999951
1586	3	87	8		1.0
1587	8	1	88	1	1.0
1589		3		96	0.999959
1590	2	3	93		0.998416
1593		2	97		0.960269
1594	90	7	1		1.0
1595	92	6		1	1.0
1597	6	90	2		1.0
1598		1	7	90	1.0
1599	1	92	6		1.0
1603	6		2	90	1.0
1604	93	6			1.0
1605		1	6	91	1.0
1607		6		93	1.0
1610	95		4		0.999989
1612	89		6		0.99998
1614	93	6			0.999998

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain