SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17547

Length: 854 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17547

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	receptor-like protein kinase HAIKU2 [Arabidopsis thaliana] sp\|Q9LJM4.1\|IKU2_ARATH RecName: Full=Receptor-like protein kinase HAIKU2; Flags: Precursor dbj\|BAB02557.1\| receptor-like protein kinase [Arabidopsis thaliana] gb\|AEE76277.1\| receptor-like protein	-	-	41%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	45%
Blast2go	receptor protein kinase clavata1	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	66%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	66%
Blast2go	seed germination	GO:0009845	Biological Process	66%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	66%
Blast2go	micropyle	GO:0070825	Cellular Component	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Overlapping hits, possible frame ERROR between 110 and 110, Distance to subject end: 376 aas, your sequence is shorter than subject: 284 - 998

Fln protein: SMYQNYLTGPLPAKLGSVSEFNMIDVSQNMLSGPLxxDLCSGGKLQYILVLDNEFTGQIPESYGNCKSMLRFRVSKNKLTGRIPRGIWEFPHVSILDLSFNSFEGEIAPAIGNARNLSELYLQRNGFSGNLPGEIGQASQLIKIDVSGNKLTGAVPSEIGKLSLLNSLSLQENNLSGPIPAQIGHCKFLSSINLAYNELTGPIPGSLGFMEVLNSLNLSNNMLSGEIPNTMAALKLSSVDFSSNSLTGPVPIELISQTNNRSFSGNPGLCGQGLESLQPCDLHT

Protein Length: 285

Fln nts: TTTCTATGTACCAAAATTATCTCACAGGGCCCCTGCCCGCAAAGCTGGGATCTGTGTCTGAATTCAACATGATTGATGTCTCACAGAACATGCTCAGCGGGCCGCTTxxxxxxGATTTGTGCAGTGGAGGCAAGCTTCAGTATATTCTTGTTCTTGATAACGAATTTACAGGCCAAATCCCTGAATCGTATGGGAACTGTAAGAGTATGCTGCGTTTTCGTGTGAGTAAGAATAAACTGACAGGGAGAATTCCCAGGGGAATTTGGGAGTTCCCACATGTTTCGATCCTGGATCTCAGCTTCAACTCTTTTGAAGGGGAGATCGCTCCTGCAATTGGGAATGCGAGGAATTTGTCTGAGCTATATCTGCAGAGAAATGGGTTCTCTGGAAACTTGCCTGGAGAAATTGGGCAAGCTTCGCAGTTGATAAAAATCGATGTTAGCGGTAACAAGTTAACTGGAGCTGTACCTTCTGAGATTGGGAAATTAAGCTTGTTGAATAGTCTGTCTTTGCAGGAAAATAATCTTTCAGGACCCATACCAGCTCAGATTGGACACTGTAAGTTTCTGTCTTCCATTAATCTTGCATATAATGAGCTCACAGGACCCATTCCTGGCAGCCTTGGTTTTATGGAAGTCCTTAATTCTCTGAATCTTTCCAACAATATGCTTTCTGGAGAAATACCCAACACCATGGCTGCTCTGAAGCTCAGTTCTGTGGATTTCTCTAGCAATTCTTTAACAGGACCAGTGCCAATTGAGCTCATCAGCCAGACCAACAACAGAAGCTTTTCTGGAAACCCTGGCCTCTGTGGTCAAGGCCTGGAATCTTTGCAGCCCTGTGATTTACATACAA

Fln Alignment:

Contig17547___MYQNYLTGPLPAKLGSVSEFNMIDVSQNMLSGPLPPDLCSGGKLQYILVLDNEFTGQIPESYGNCKSMLRFRVSKNKLTGRIPRGIWEFPHVSILDLSFNSFEGEIAPAIGNARNLSELYLQRNGFSGNLPGEIGQASQLIKIDVSGNKLTGAVPSEIGKXXXXXXXXXXXXXXXGPIPAQIGHCKFLSSINLAYNELTGPIPGSLGFMEVXXXXXXXXXXXXGEIPNTMAALKLSSVDFSSNSLTGPVPIELISQTNNRSFSGNPGLCGQ
Q19AV8_______________LFSNRLTGRLPESLGRYSDLQALDIADNLLSGSLPPDLCKNKKLEILSIFNNVFAGNIPESLGTCTSLNRVRLGGNKFNGSVPSSFWGLPHISLLELKDNNFEGLISPDIANAKCLSQLVINGNTFTGSLPTEIGELRNLSEIIASNNFLTGALPPSVGKLQQLGKLDLSNNQLSGELPAEISSCKQLGEINLSKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIPSEFGNLKLNTFDVSNNRLSGAVPLAFANPVYEKSFLGNPELCSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain