SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17189

Length: 1001 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17189

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative seed imbibition protein [Persea americana]	-	-	44%
FL-Next	Isoform 3 of Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2	-	-	45%
Blast2go	galactinol--sucrose galactosyltransferase 2	-	-	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactinol--sucrose galactosyltransferase.	EC:2.4.1.82	-	0.0	62%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Galactose metabolism	00052		0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	62%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	62%
Blast2go	raffinose catabolic process	GO:0034484	Biological Process	62%
Blast2go	galactinol-sucrose galactosyltransferase activity	GO:0047274	Molecular Function	62%
Blast2go	protein binding	GO:0005515	Molecular Function	62%
Blast2go	response to karrikin	GO:0080167	Biological Process	62%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Raffinose synthase	IPR008811	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q94A08-3

Fln msg: Distance to subject end: 303 aas, your sequence is shorter than subject: 280 - 564

Fln protein: MTIGSAVEVNEGNLVIRGRVTLTGVPDNVNVTPLSTEATSLAGHPAFLGAISTTAESSSRHVFKLGQLHTGFRLLCLFRFKIWWMMPHVGSCAKDIPVESQMLLLEARQESALDQENGDDAHDDAFYILFLPVLEGQFRSSLQGNQSNELELCVESGDPAVQTTQALQAIFNQCRGESL*AHK*ICQGSGEAKRHICAP*KEKGLSCIIQ*IPGIVDWFGWCTWDAFYTDVNPEGIHQGLQSLEEGGTPARFLLIDDGWQQTFNEFSRKDGAFGEEIHFA

Protein Length: 281

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGGTGCGTCTATGCAATGATATTTTTCTGTCTGGATTGTAAGTCCAATATGAAGCTGCCTACGTGTGTGTGTATATTGGGCTATTGTTGTGAGTTCTGACAGAAAGGGCTGTGTATATATTTCGAATCATAATC_-_ATGACGATTGGATCTGCAGTAGAGGTGAATGAGGGGAATTTGGTGATAAGAGGAAGAGTGACACTTACAGGAGTCCCTGACAATGTCAATGTAACGCCGCTCTCGACTGAGGCAACGTCATTGGCAGGACATCCTGCGTTCCTGGGAGCCATTTCAACAACAGCAGAGAGTAGCAGTCGCCATGTATTCAAGCTTGGACAGCTTCACACGGGATTCAGGCTTCTGTGCTTGTTCAGATTCAAGATCTGGTGGATGATGCCTCATGTGGGAAGTTGTGCCAAAGACATACCAGTGGAATCACAGATGTTGCTTCTAGAAGCCAGACAAGAGTCTGCATTGGATCAAGAAAATGGCGATGATGCCCATGATGATGCATTTTACATTCTATTTTTGCCGGTCTTGGAAGGCCAATTTAGGAGCAGTCTGCAAGGCAACCAGTCCAATGAATTAGAGTTATGTGTAGAAAGTGGAGATCCTGCAGTGCAAACCACACAAGCATTGCAGGCAATTTTTAATCAATGCAGGGGAGAATCCCTTTGAGCTCATAAATGAATCTGTCAAGGCTCTGGAGAAGCAAAAAGGCACATTTGTGCACCGTGAAAGGAAAAAGGTTTGAGCTGCATCATTCAATAGATACCAGGAATTGTTGATTGGTTTGGGTGGTGTACATGGGATGCATTCTACACTGATGTCAATCCAGAGGGAATCCATCAAGGTTTGCAAAGTCTGGAAGAGGGAGGCACGCCAGCAAGGTTTCTCTTAATCGATGATGGATGGCAACAAACATTTAATGAATTCTCAAGGAAAGATGGGGCATTTGGTGAAGAAATCCACTTTGCAA

Fln Alignment:

Contig17189___MTIGSAVEVNEGNLVIRGRVTLTGVPDNVNVTPLSTEATSLAGHPAFLGAISTTAESSSRHVFKLGQLHTGFRLLCLFRFKIWWMMPHVGSCAKDIPVESQMLLLEARQESALDQENGDDAHDDAFYILFLPVLEGQFRSSLQGNQSNELELCVESGDPAVQTTQALQAIFNQCRGESL*AHK*ICQGSGEAKRHICA-P*KEKGLSCIIQ*IPGIVDWFGWCTWDAFYTDVNPEGIHQGLQSLEEGGTPARFLLIDDGWQQTFNEFSRKDGAFGEEIHFA
Q94A08-3_____________MTITSNISVQNDNLVVQGKTILTKIPDNIILTPVTGNGF-VSG--SFIGA--TFEQSKSLHVFPIGVLE-GLRFMCCFRFKLWWMTQRMGSCGKDIPLETQFMLLESKDEV---EGNGDDA--PTVYTVFLPLLEGQFRAVLQGNEKNEIEICFESGDKAVETSQGTHLVYVHAGTNPF---EVIRQSVKAVERHMQTFHHREK------KKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPPKFLIIDDGWQQIENKEKDENCVVQEGAQFA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
154		80	20		0.995493
169			16	83	0.994512
257	11	88			0.923564
283			88	11	0.923564
371			85	14	0.993533
681	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain