SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17096

Length: 1329 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17096

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Contains similarity to gb\|Y13720 Hap2a transcription factor from Arabidopsis thaliana	-	-	1.0e-30	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	nuclear transcription factor y subunit a-7-like isoform 1	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	0.0	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE55

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 223 - 288

Fln protein: S*PWLSLNVAAYGAQAMIPPHMLGVPQAGLPLPPSDAVEEPPVYVNAKQYYGILRRRQSRAKAESENKLVKSRRPYLHESRHLHALRRARGCGGRFLNTKKDGNNQEVASRDQDSHDSTGQDNKVVNPDAGKDVALQVSDRMQRTDGVAFIGNGISTPPPGTVAPGQVGVAVSVSNGAHYNYPQRRGFHPSAFHSLSSGKAESGQVGGMVSNGGHHTAVATQ*

Protein Length: 224

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTCGCAGCATATGGTGCACAAGCCATGATTCCTCCTCATATGCTGGGGGTGCCTCAAGCTGGTCTTCCATTACCACCATCAGATGCCGTTGAGGAACCTCCTGTCTATGTAAATGCGAAACAATATTATGGAATTTTGAGACGCCGACAATCACGAGCAAAAGCAGAGTCTGAGAACAAGCTGGTAAAGTCTAGAAGGCCATATCTTCATGAATCCCGGCACCTCCATGCTTTAAGACGAGCAAGGGGTTGTGGTGGTCGTTTTCTAAACACCAAAAAAGACGGAAATAATCAGGAAGTTGCGTCAAGAGATCAGGATTCTCATGATTCTACAGGCCAAGATAATAAGGTGGTCAATCCTGATGCAGGGAAGGATGTTGCATTACAAGTGTCTGACAGGATGCAACGTACTGATGGTGTAGCATTTATAGGCAATGGCATTAGCACTCCTCCTCCTGGAACTGTTGCTCCTGGTCAAGTAGGAGTGGCTGTAAGTGTGTCAAATGGCGCACATTACAATTATCCTCAGAGGCGAGGATTTCATCCATCTGCATTTCATTCTCTTTCATCTGGGAAAGCAGAAAGTGGCCAAGTGGGAGGCATGGTTTCAAATGGAGGCCACCATACAGCAGTAGCAACCCAATGA___AGTCAGCTTCCTTGACAAGATATTCTTCAAGGAAGGAAAAGGGTTCAGCATACATCTGAGATTAGATCTCTTTTCCGATTCTGAAGCTGATCTTTTTACCTGGCCTTCTCTTGAACTTGGTATATTTGTGTCTGGACTCGAGACACTAGAGCAACTATGCTGTAGTTTTATGTGGTGCTGAGGCAGGGGAGAATTCCATCGACCTGCATTGAAATGGACAAAGGCAAATCATTCTTGGCTAATGAATGTGATACTATTTAAGCTCTAGTATTTAACCAACTTTTATTGACCGGTTTAAGTCTTCTTGAAAGTGGACAAAGGAAGATCGTTATTGGCTAATGAATGTAGTACTATGTCAGCTGTAGTATTTAGCCAACCTTTATTGACCGGTATAAGTTATGTTGAAATTGGACGAGTGCAAATCATTCTTGGCTAATGAATGTGGTACTATCTAAGCTATAGTGACTAATGGACTTTTATTGACCGGCATAAGTTATCTTGAAAATGGACAAATGCATATCACTCTTGGCTAGTGAAAGTGGTGTTATTTAAGCTTATAGTATATAACTAACTTGTATTGACCGGTTTTAATCGCTCAAATAGTCTTGATAACTCTTAATAACTATGAGCTAGTTGAGATGCCAAATTAATTCCCTTT

Fln Alignment:

Contig17096___PWLSLNVAAYGAQAMIPPHMLGVPQAGLPLPPSDAVEEPPVYVNAKQYYGILRRRQSRAKAESENKLVKSRRPYLHESRHLHALRRARGCGGRFLNTKKDGNNQEVASRDQDSHDSTGQDNKVVNPDAGKDVALQVSDRMQRTDGVAFIGNGISTPPPGTVAPGQVGVAVSVSNGAHYNYPQRRGFHPSAFHSLSSGKAESGQVGGMVSNGGHHTAVATQ
D5AE55_______________PFYGNYVAAYGAQAMIPPHMLGVHQAGLPLPPSDAVEEPPVYVNAKQYHGILRRRQSRAKAESENKLIKSRKPYLHESRHLHALRRARGCGGRFLNTKKDGNNQEVVSGDQDSHDSIGQDNKVVNSDSGKDGALQVSNRIQRTDDVAYIGNGIST-HSGTVAPGQVGVGISVSNGTHFNYPQRRGFHSSAFHSLSSGKAESGQVGGMVSNGGRHTAVATQ

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
749			90	10	0.999898
750	80			15	1.0
751		5	10	85	0.999793
752	5	5	10	80	0.99967
756	80		5	10	0.99967
757	90	10			0.999898
758	10	5	85		0.999793
761	10		90		0.999898
1140	86		13		0.999973
1175	90		10		0.90298
1263	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain