SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17049

Length: 664 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17049 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S30 [Arabidopsis thaliana] ref\|NP_200478.1\| 40S ribosomal protein S30 [Arabidopsis thaliana] ref\|NP_565458.1\| 40S ribosomal protein S30 [Arabidopsis thaliana] ref\|XP_002866160.1\| 40S ribosomal protein S30 [Arabidopsis lyrata subsp. l	-	-	5.0e-19	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	40s ribosomal protein s30	-	-	7.23255e-27	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	7.23255e-27	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	7.23255e-27	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S30	IPR006846	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
436	58		41		1.0
447			58	41	1.0
489		40		59	1.0
497	58	1	40		1.0
504	56			43	1.0
505			97	2	0.941605
512	80		1		1.0
514	97			2	0.971188
515		97	2		0.972772
517	94		4	1	0.999876
519	1	94	4		0.999888
521	2			97	0.977151
522	2		97		0.977151
524	97	2			0.977151
526	97	2			0.977151
527	97	2			0.977151
528	97		2		0.977151
529	97		2		0.977151
534	7	1	89		1.0
535	2		97		0.979771
547	97	2			0.972772
554	89	7	1	1	1.0
555	89	9	1		1.0
556	92		1	1	0.999691
557	87		1	3	1.0
559	1	95	3		0.911382
560	6	91		1	1.0
561		3		96	0.987242
562	87	10	1		1.0
563	89	8	1		1.0
564		7	1	87	1.0
567	92			7	1.0
571		3		96	0.993037
573	94	3	1		0.960243
575		96	3		0.993591
578		4		96	0.99411
580	95	4			0.994598
581	4	95			0.994598
582	73	15	6	4	1.0
583	83	13	2		1.0
584	2	13	81	2	1.0
585	2	6	2	88	0.999992
587		89		8	0.999999
588	77	16	3		1.0
589	80	6	9		0.999999
590		19		80	1.0
591		18	7	3	1.0
592	80	15	3		1.0
593	84	11	3		1.0
594		11	80	7	1.0
595		4	88		0.999262
596	84	4		8	0.998474
597	8	12		80	1.0
598	13	4	81		1.0
600		9	90		0.999842
601	27			72	1.0
602	9	18		72	1.0
604			11	88	0.999937
605	88			11	0.999937
608	87	12			0.999964
611		85	14		0.999981
616	44	55			1.0
617	44	55			1.0
618	44	55			1.0
619	44	55			1.0
621	44			55	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
340	351	CTT CTT CTT CTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain