SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16912

Length: 1794 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16912

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	probable xyloglucan endotransglucosylase hydrolase protein 23	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED5

Fln msg: your sequence is longer than subject: 328 - 274

Fln protein: MDTPLHLLFLLLASSAALASANFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPIRVFKNRETELGKVDSN*HYPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFSAATASSFDAAAEEAALESNQEQRLEWVRKNYMIYSYCGEPSIQFHSRMQMNPQFNSIPLNSANEFFWIPDLSTHSFLLHDLFFHSFSDTHDLFFHSLSETHKQKRM*

Protein Length: 329

Fln nts: CATACGCATTATATTTAAGCATTTAAAGATTGCACCCATAAAAACATAAGCATTATATTTTGCCATATACAGGATGTAAAATCGCAGAGAGTGTACATGGGATGAGAAGCAGGTAAAACTGCTAACCAAATGGACGGTTCAATAGAATGTAACGATAGTATTAAAGTTCTTTATCATTTCATATTTTCGGAATCTATCTGCAACAGAGAAACATAATCAAATAGACACCTCGATGTATTTTGCTAAATGAATGCAAAAACTGCATTCACACCATTATTTGTATTGCATTAACGTCAAATTTTTACTAAAATCTGAATTATAGCATAATAGGATTTTCAGAGCTTTGAATCTCAAGCTCATATTCCCATTTATTTATTGAAGGAGAACGTAGGGTTCAGAATGATAATAATACTAAGAACGCGGGGGTAGACTGCAGCAACGGTAGACCTTTGCTCGATGCGAATGTCGAGCGCAGGTGTCGCCCTTGGGACACTCACCACAACTTTTCACGTTATGACAAAGATGACCAATCGGAACGCCATGTTTAGCTGCCACTGCATTTAGCAGGAACGAGACTGCCAGCAGCCATACAAGTGTGAGAAGCCTGCCAATCTTCACCTGTCTTCCTGCCATTTTCAGCGCCGAGACTAAAACACAATTACCTCAACAACGTTAGCGAGTGTTTTCTCTCGTTTCTGGAACTGCTGCTCTGCATCACAAACTCTTTTCCCAATCCaAATCctgATCGACATCGACATCGAC_-_ATGGACACACCTCTTCACCTCCTCTTTCTTTTATTGGCCTCCTCGGCAGCTCTTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGTAATGATCGTGCTAAAATCATTGACAATGGACAACAGTTGCAGCTTACGCTTGACCGCTCTTCAGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACCGGGCAACTCTGCAGGCACAGTCACTACTTTTTATCTATCATCTCAAGGTCCCAAACACGACGAAATAGACTTCGAATTTCTGGGCAACCTGTCCGGAGATCCTTATATTTTGCACACTAATGTCTTTGCTCAAGGCCTTGGTGGGCGTGAGCAGCAATTTTACTTGTGGTTCGACCCAACCCTGGATTTCCACACTTACTCCGTGCTCTGGACATCAAACCAAATTATATTTTCTGTAGACGGGAGTCCTATTCGAGTGTTTAAGAACAGGGAGACAGAGTTGGGTAAAGTGGATAGCAATTAaCATTATCCCAAGAGCCAAGCAATGAGCGTCTACTCCAGCCTTTGGAATGCAGATGATTGGGCAACCAGAGGTGGGCTTGTGAAGACCGACTGGACTAAAGCGCCCTTTGTTGCATCCTTCCGCAATTTCAGTGCTGCTACTGCTTCTTCTTTTGACGCCGCTGCAGAGGAGGCTGCTTTGGAATCGAACCAAGAGCAGAGGCTGGAGTGGGTGAGGAAGAACTACATGATCTACTCTTACTGTGGAGAACCCTCAATTCAATTCCATTCCCGAATGCAAATGAACCCTCAATTCAATTCCATTCCATTGAATTCAGCGAATGAATTCTTCTGGATACCTGACCTTTCCACCCATTCTTTCCTATTACATGATCTATTCTTTCATTCTTTTTCAGACACACATGATCTATTCTTTCATTCTTTGTCAGAAACACACAAACAGAAACGCATGTAA___CACAATCAATTCATTTTGGGTAGTGGTAATACAAAATCGAGCTACGAG

Fln Alignment:

Contig16912___NFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPIRVFKNRETELGKVDSN*HYPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFXXXXXXXXXXXXXXXXXXXXXXQRLEWVRKNYMIYSYCGE
D5AED5_______________NFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGTPVRVFKNRETELGNVDTNYHYPKNQAMRIYSTLWNADDWATRGGLVKTDWTKAPFVASFRNF-NAATSSSSDSAAEEALDSNQEQRLQWVRKNYMIYNYCAD

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
189		80	20		0.995493
191	20		80		0.995493
205		20		80	0.995493
209		80	20		0.995493
242		14		85	0.993533
271	12		87		0.992554
293		12		87	0.992554
304		87		12	0.992554
470	93		6		0.999998
629	3			96	1.0
634		0		97	1.0
641		97	2		1.0
642			25	75	1.0
647	2		97		1.0
648	97		0	2	1.0
649		97		2	1.0
659	98		1		0.929139
660	0	1	0	96	0.998084
663	3	85	1	8	1.0
664	7	92		0	1.0
665	1	0	0	97	0.990108
670	92	4	1	0	1.0
671	95	1		2	0.999866
672		96		0	0.999989
673	1		92		1.0
674	15	7		75	1.0
675	8	11		80	1.0
677	40		55	3	1.0
678		58	20	16	1.0
679	5	5	58	23	1.0
680	53			26	1.0
681	26		53	20	1.0
683		30	69		1.0
685		33		66	1.0
743		50	50		1.0
744	50			50	1.0
745	50	50			1.0
797			16	83	0.994512
1119		88	11		0.923564
1123	88		11		0.923564
1165	14	85			0.993533
1170		85	14		0.993533
1171	14	85			0.993533
1172		85	14		0.993533
1173		14		85	0.993533
1174	14		85		0.993533
1178			14	85	0.993533
1179			14	85	0.993533
1181		85		14	0.993533
1182	85		14		0.993533
1183		85	14		0.993533
1185		85	14		0.993533
1294		66		33	0.997452
1522	33			66	0.997452
1525		33		66	0.997452
1527			33	66	0.997452
1528	66	33			0.997452
1532	50	50			1.0
1533		50		50	1.0
1534			50	50	1.0
1536	50	50			1.0
1539		50		50	1.0
1540	50		50		1.0
1541	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
744	764	CATCGA CATCGA CATCGA CAT	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain