SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16903

Length: 1145 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16903 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	probable xyloglucan endotransglucosylase hydrolase protein 23	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED5

Fln msg:

Fln protein: MDTPLHLLFLLLASSAALASANFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPVRVFKNRETELGKVDSNYHYPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFNASATPSFDAAAEEVALESNQEQRQRLQWVRKNYMIYDYCADTKRFPQGPPPECK*

Protein Length: 277

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATCTACCATCAACAGCGACAATTTATCTCTTCTCTCGTTTCTGGAACTGCTGCTCCGCATCACAAACTCTTTTCCCAATCCCTAATCGACATCGACATCGACATCGAC_-_ATGGACACACCTCTTCACCTCCTCTTTCTTTTATTGGCCTCCTCGGCAGCTCTTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGTAATGATCGTGCTAAAATCATTGACAATGGACAACAGTTGCAGCTTACTCTTGACCGCTCTTCTGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACCGGGCAACTCTGCAGGCACAGTCACTACTTTTTATCTATCATCTCAAGGTCCCAAACACGACGAAATAGACTTTGAATTTCTGGGCAACCTGTCTGGAGATCCTTATATTTTGCACACTAATGTCTTTGCTCAAGGCCTTGGTGGACGTGAGCAGCAATTTTACTTGTGGTTCGACCCAACCCTGGATTTCCACACTTACTCCGTGCTCTGGACATCAAACCAAATTATATTTTCTGTAGACGGAAGTCCTGTTCGAGTGTTTAAGAACAGGGAGACAGAGTTGGGTAAAGTGGATAGCAATTATCATTATCCCAAAACCCAAGCAATGAGGGTCTACTCCAGCCTTTGGAATGCAGATGATTGGGCAACCAGGGGTGGGCTTGTGAAGACCGACTGGACTAAAGCTCCCTTTGTTGCATCCTTTCGCAATTTCAATGCTTCCGCTACTCCTTCTTTTGATGCCGCGGCAGAGGAGGTGGCTTTGGAATCGAACCAAGAACAGAGGCAGAGGCTCCAGTGGGTACGAAAGAACTACATGATCTACGATTATTGTGCAGACACCAAGAGATTCCCCCAGGGACCGCCTCCCGAATGCAAATAA___AACCTCAATCCTTTGAATTCAGAGAATGAACTCTGAATTCTTTCCTTCCAAGTATTCTGATTCATTTCTATTACATTAATTCTTTCATTCTTTCTTAGACACACATGTAGAATATGAGAGGGTATCAATCATTTCATTTTGGAACTGCTATACAAAAGCAAGATTCTTTTGATGATTCAAAA

Fln Alignment:

Contig16903___NFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPVRVFKNRETELGKVDSNYHYPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFNASATPSFDAAAEEVALESNQEQRQRLQWVRKNYMIYDYCADTKRFPQGPPPECK
D5AED5_______________NFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGTPVRVFKNRETELGNVDTNYHYPKNQAMRIYSTLWNADDWATRGGLVKTDWTKAPFVASFRNFNAATSSSSDSAAEE-ALDSNQE--QRLQWVRKNYMIYNYCADTKRFPQGLPPECK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1006			68	31	1.0
1015		35	21		1.0
1017	2			51	1.0
1021	2	13	84		1.0
1023			5	94	0.9982
1024	5		92		0.992495
1025			5	94	0.9982
1026	2	92	5		0.992495
1027	5		92		0.992495
1029		2	5	91	0.993509
1030	5		91		0.99441
1032		91	8		1.0
1038	6	90	3		0.996531
1105		4		95	0.996599
1108	5			94	0.997984
1109	2	87	5	2	0.9224
1114	2	5		91	0.993509
1115	2	8		89	0.999999
1116	5	2	91		0.993509
1117	94	5			0.998578
1118	2		2	88	0.982716
1120		5	94		0.998894
1121		5		94	0.998894
1124	93		6		0.99903
1125		9	3	87	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1009	1034	ATGTCG ATGTCG ATGTCG ATGTCG AT	26

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain