SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16795

Length: 2067 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene16795
CCTCAAATTATTGTTATTGTTCTATTTGCACTGCATCTTCGGAAAATATCAATTTTTGGAAATCGAGTTTTTCAAGTTTATGCGGTTCCTTTAGGGCTTGCAATCACATGGGCATATGCATTTTTGCTTACGGAAATAGGAGTTTACAACTATAAGGGCTGTGACATGAAGGCAATGGGTTCTCATATTAAAAATGAGAGATGTCAGAGGCATATTTATACTATGCAGCATTGTCGGACGGATGTTTCCGATGTTCTCAAGACATCAGCATGGTTTAGATTCCCTTACCCTTTTCAGTGGGGTGTTCCGACTTTCCACTTCAAGACTGCAGCAGTGATGATAGTGGCATCTATCATTGCAACTGTTGATTCGGTTGGGACATATCATGGAATATCCCTTCTGGTGGCATCGAAGGCACCGACACGAAATGTTGTAAGTAGAGGAATTGGTCTGGAAGGCTTGACTAGCTTGTTGGCTGGTCTTTGGGGCACGGGCACAGGAATGACAACTCTCACGGAGAATGTGCATACAGTTGCTGTAACAAAGGTTGGGAGCCGTCGTGCTGTGGAGTTTGGGGCATACATTTTGATTGTTCTGTCATTCATTGGTAAGGTGGGAGGATTTGTTGCATCCATTCCACAAGTTATTGTTGCTGGGCTTTTATGTTTCATATGGACAATGCTTGTTGCTTTGGGTCTTTCAAACCTGAGATATAGTGAAACTGGAAGCTCGCGGAATATGATAATAGTGGGACTATCTTTATTCCTTTCTCTATCAATTCCTTCTTATTTTCAACAACATGTTAAAGGACATAACACCCAGTTACAAAAACAGTTCCAACCATATGCAATTGGGGAAAATGGTCCCATCCAAACTGGTGTGCATGCGATTAATTTCTTCCTAAATACGGTTTTCTCAATGCACATGGTCATTGCATTCATTGTAGCGTTGATTTTGGATAATACTGTTCCTGGCAGTCGACAGGAGAGGGGGACTTATATATGGTCTCGTTCAGGGCCTGCTAGGAAGGAGCCTGCTGTTGTAAAGGATTACGGTTTGCCATTTGGAATCTCAAGATTCTTTTCGTGGGCACGATGGGTAGGGCTATGAGTAGTTTTCTGTAAAAAGCGAATGGAGGAAATTCTATTAGATTTGTAAAATGTTTGGAGCCAGATTTGAGTTTCTATCAGGTCCACCTTGATATAGTTGATTATATTTTATAATAATAGTGCTATCATTTTTTGGAAAAGAAGGGACTAGCCAGGGATACGGTTTCTGCCAAGGTGAACAGGCTGTGCTGAATCAGTGGAAGATCGTCTCAATTCTTTATGTTGTTCTGCAACAGAGTTGGCAGAAAAACATGGTGTTCATAATGAAGACAAATGTGCATCTTGACAAGTAAATACATCTACAAGTCTTTAAATCAGGATCTTTTATTGTTTGTTTCTAAAACCCTGAATCTTTTTGGATGTGATGCATTTACAGCATCTTCTCCAAACCCATTTATCTAGATGCTAACAGGAAATTTTATCTTGATGAATGGGATGGGCATATATCTCATAGTGGTAAGAGAATAGATGCCATTTTAGGTAAGAGAACTCAAGTCATATTAGGTAAGACCAACTCTCTACTGTATGCAAGACCAACTTTATACTATTATGTTGGAGCTTGTTCTGGAGCACTGACCCCACTTCCTCAATGGTTGCATCGTTAAACTTGACCCTCTGTACTTTTTGTCTAGTCGGCCAACATTATTTCACACAAACTTGGGTTCTTCTAGTGTCTACTGACCTGCTATTCTCATTCATGTGAGGACAACTGTTATTTTAGAGAAAACTGAGATTTGGTTGCACCATATGCATGCACATATCCTTAACTAAATCAAGGCAACCTCCACAAACTATACAATCTCAAACATTGAAGGGAATCTTGGACTATTTCCAAAAGTTTATGTTCTCGACAAAATGCTACTAGTAGCTTTTATATGTGCAGCTCTCGGAAAAATAACCTTATTGCACATGCATGATAGGTGGTCTATAAATCATCAAGAGACAGGTTTTGGGGTGC

Ace file of the UniGene sp_v2.0_unigene16795 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nucleobase-ascorbate transporter 12 [Arabidopsis thaliana] sp\|Q3E7D0.3\|NAT12_ARATH RecName: Full=Nucleobase-ascorbate transporter 12; Short=AtNAT12 gb\|AAM20397.1\| putative membrane transporter [Arabidopsis thaliana] gb\|AAN72132.1\| putative membrane transp	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	nucleobase ascorbate transporter	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Xanthine/uracil permease	IPR006042	-	-
Sma3	Xanthine/uracil/vitamin C permease	IPR006043	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: your sequence is shorter than subject: 370 - 524

Fln protein: PQIIVIVLFALHLRKISIFGNRVFQVYAVPLGLAITWAYAFLLTEIGVYNYKGCDMKAMGSHIKNERCQRHIYTMQHCRTDVSDVLKTSAWFRFPYPFQWGVPTFHFKTAAVMIVASIIATVDSVGTYHGISLLVASKAPTRNVVSRGIGLEGLTSLLAGLWGTGTGMTTLTENVHTVAVTKVGSRRAVEFGAYILIVLSFIGKVGGFVASIPQVIVAGLLCFIWTMLVALGLSNLRYSETGSSRNMIIVGLSLFLSLSIPSYFQQHVKGHNTQLQKQFQPYAIGENGPIQTGVHAINFFLNTVFSMHMVIAFIVALILDNTVPGSRQERGTYIWSRSGPARKEPAVVKDYGLPFGISRFFSWARWVGL*

Protein Length: 371

Fln nts: CCTCAAATTATTGTTATTGTTCTATTTGCACTGCATCTTCGGAAAATATCAATTTTTGGAAATCGAGTTTTTCAAGTTTATGCGGTTCCTTTAGGGCTTGCAATCACATGGGCATATGCATTTTTGCTTACGGAAATAGGAGTTTACAACTATAAGGGCTGTGACATGAAGGCAATGGGTTCTCATATTAAAAATGAGAGATGTCAGAGGCATATTTATACTATGCAGCATTGTCGGACGGATGTTTCCGATGTTCTCAAGACATCAGCATGGTTTAGATTCCCTTACCCTTTTCAGTGGGGTGTTCCGACTTTCCACTTCAAGACTGCAGCAGTGATGATAGTGGCATCTATCATTGCAACTGTTGATTCGGTTGGGACATATCATGGAATATCCCTTCTGGTGGCATCGAAGGCACCGACACGAAATGTTGTAAGTAGAGGAATTGGTCTGGAAGGCTTGACTAGCTTGTTGGCTGGTCTTTGGGGCACGGGCACAGGAATGACAACTCTCACGGAGAATGTGCATACAGTTGCTGTAACAAAGGTTGGGAGCCGTCGTGCTGTGGAGTTTGGGGCATACATTTTGATTGTTCTGTCATTCATTGGTAAGGTGGGAGGATTTGTTGCATCCATTCCACAAGTTATTGTTGCTGGGCTTTTATGTTTCATATGGACAATGCTTGTTGCTTTGGGTCTTTCAAACCTGAGATATAGTGAAACTGGAAGCTCGCGGAATATGATAATAGTGGGACTATCTTTATTCCTTTCTCTATCAATTCCTTCTTATTTTCAACAACATGTTAAAGGACATAACACCCAGTTACAAAAACAGTTCCAACCATATGCAATTGGGGAAAATGGTCCCATCCAAACTGGTGTGCATGCGATTAATTTCTTCCTAAATACGGTTTTCTCAATGCACATGGTCATTGCATTCATTGTAGCGTTGATTTTGGATAATACTGTTCCTGGCAGTCGACAGGAGAGGGGGACTTATATATGGTCTCGTTCAGGGCCTGCTAGGAAGGAGCCTGCTGTTGTAAAGGATTACGGTTTGCCATTTGGAATCTCAAGATTCTTTTCGTGGGCACGATGGGTAGGGCTATGA___GTAGTTTTCTGTAAAAAGCGAATGGAGGAAATTCTATTAGATTTGTAAAATGTTTGGAGCCAGATTTGAGTTTCTATCAGGTCCACCTTGATATAGTTGATTATATTTTATAATAATAGTGCTATCATTTTTTGGAAAAGAAGGGACTAGCCAGGGATACGGTTTCTGCCAAGGTGAACAGGCTGTGCTGAATCAGTGGAAGATCGTCTCAATTCTTTATGTTGTTCTGCAACAGAGTTGGCAGAAAAACATGGTGTTCATAATGAAGACAAATGTGCATCTTGACAAGTAAATACATCTACAAGTCTTTAAATCAGGATCTTTTATTGTTTGTTTCTAAAACCCTGAATCTTTTTGGATGTGATGCATTTACAGCATCTTCTCCAAACCCATTTATCTAGATGCTAACAGGAAATTTTATCTTGATGAATGGGATGGGCATATATCTCATAGTGGTAAGAGAATAGATGCCATTTTAGGTAAGAGAACTCAAGTCATATTAGGTAAGACCAACTCTCTACTGTATGCAAGACCAACTTTATACTATTATGTTGGAGCTTGTTCTGGAGCACTGACCCCACTTCCTCAATGGTTGCATCGTTAAACTTGACCCTCTGTACTTTTTGTCTAGTCGGCCAACATTATTTCACACAAACTTGGGTTCTTCTAGTGTCTACTGACCTGCTATTCTCATTCATGTGAGGACAACTGTTATTTTAGAGAAAACTGAGATTTGGTTGCACCATATGCATGCACATATCCTTAACTAAATCAAGGCAACCTCCACAAACTATACAATCTCAAACATTGAAGGGAATCTTGGACTATTTCCAAAAGTTTATGTTCTCGACAAAATGCTACTAGTAGCTTTTATATGTGCAGCTCTCGGAAAAATAACCTTATTGCACATGCATGATAGGTGGTCTATAAATCATCAAGAGACAGGTTTTGGGGTGC

Fln Alignment:

Contig16795___PQIIVIVLFALHLRKISIFGNRVFQVYAVPLGLAITWAYAFLLTEIGVYNYKGCDMKAMGSHIKNERCQRHIYTMQHCRTDVSDVLKTSAWFRFPYPFQWGVPTFHFKTAAVMIVASIIATVDSVGTYHGISLLVASKAPTRNVVSRGIGLEXXXXXXXXXXXXXXXXXXXTENVHTVAVTKVGSRRAVEFGAYILIVLSFIGKVGGFVASIPQVIVAGLLCFIWTMLVALGLSNLRYSETGSSRNMIIVGLSLFLSLSIPSYFQQHVKGHNTQLQKQFQPYAIGENGPIQTGVHAINFFLNTVFSMHMVIAFIVALILDNT--VPGSRQERGTYIWSRSGPARKEPAVVKDYGLPFGISRFF
B8LQ21_______________PMLIIFVGFAQYLKHIQARDLPVFERFPVLICITLVWAYAHLLTASGAYK-----------HVPER-------TKINCRTDRAHLISSAPWIKLPYPLQWGAPTFDAGHTFGMMSAVLVSLIESTGAYKAASRLASATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGITRVGSRRVVQISACFMIFFSILGKFGALFASIPFPIFAALYCVLFGLVAAVGISFIQFTNMNSMRNLFILGVSLFLGLSIPQYFNEF--------------YATSRVGPVHTNAGWFDDFLNTIFSSPPTVALIIAVFLDNTLEVEHSKKDRGMPWWVKFRTFRGDSRNEEFYTLPFNLNKFF

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
371	11		88		0.923564
532		10		90	0.90298
665		16		83	0.994512
666	16			83	0.994512
667			16	83	0.994512
668	83	16			0.994512
670	16			83	0.994512
671	16			83	0.994512
676	80	20			0.995493
679		20		80	0.995493
688		25	75		0.996473
837		85		14	1.0
888	4	95			0.996599
985	89		10		1.0
1003	37	62			1.0
1015			87	12	0.999964
1016			13	86	0.999973
1018	86		13		0.999973
1020		89	10		0.999919
1021	10	89			0.999919
1022		10		89	0.999919
1023	10			89	0.999919
1024			10	89	0.999919
1025	89	10			0.999919
1029		89	10		0.999919
1030	89		10		0.999919
1031			89	10	0.999919
1034	5	10	84		0.999846
1037			11	88	0.999937
1165			13	86	0.999973
1202	10		90		0.90298
1203		10	90		0.90298
1208	10			90	0.90298
1209			10	90	0.90298
1210			10	90	0.90298
1213	10	90			0.90298
1215		90	10		0.90298
1217	90	10			0.90298
1218			10	90	0.90298
1777	80			20	0.995493
1778	80		20		0.995493
1781			80	20	0.995493
1783	20			80	0.995493
1784	80	20			0.995493
1787		20	80		0.995493
1788		20	80		0.995493
1791			20	80	0.995493
1792		80	20		0.995493
1795	80	20			0.995493
1798		80	20		0.995493
1800		20		80	0.995493
1848	80		20		0.995493
1860		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain