SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16547

Length: 1709 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16547 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA thiolase 2 [Arabidopsis thaliana] sp\|Q56WD9.2\|THIK2_ARATH RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal; AltName: Full=Acetyl-CoA acyltransferase 2; AltName: Full=Beta-ketothiolase 2; AltName: Full=Peroxisomal 3-oxoacyl-CoA thiolase	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	3-ketoacyl- thiolase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetyl-CoA C-acyltransferase.	EC:2.3.1.16	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid elongation in mitochondria	00062	88%
Blast2go	Fatty acid metabolism	00071	88%
Blast2go	Valine, leucine and isoleucine degradation	00280	88%
Blast2go	Geraniol degradation	00281	88%
Blast2go	Benzoate degradation	00362	88%
Blast2go	alpha-Linolenic acid metabolism	00592	88%
Blast2go	Ethylbenzene degradation	00642	88%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	88%
Blast2go	Biosynthesis of plant hormones	01070	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	88%
Blast2go	glyoxysome organization	GO:0010111	Biological Process	88%
Blast2go	metabolic process	GO:0008152	Biological Process	88%
Blast2go	acetyl-CoA C-acyltransferase activity	GO:0003988	Molecular Function	88%
Blast2go	peroxisome	GO:0005777	Cellular Component	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%
Blast2go	nucleolus	GO:0005730	Cellular Component	88%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Dynein heavy chain	IPR004273	-	-
Sma3	ATPase, dynein-related, AAA domain	IPR011704	-	-
Sma3	Dynein heavy chain, domain-1	IPR013594	-	-
Sma3	Dynein heavy chain, domain-2	IPR013602	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ57

Fln msg: atg_distance in limit (1-15): atg_distance = 1, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 421 - 462

Fln protein: MASACAAGDSAAYQRVGDFGDDIVIVAAYRTPICKAKRGGFKDTHPDDLLAAVLKGLLEKTGINPGEVGDIVVGTVLAPGSQRASQCRMASFYAGFPETVPVKTVNRQCSSSLQAVADVAAAIKAGFYDIGIGAGLETMTIDSMAWAGPVNPRNETHKQAQDCLLPMGITSENVAERYGVSRHDQDQAAVESHRHAAAAVAAGRFKDEIIPVETKIVDPKTGEEKHVTISVDDGIRPDTSLSILAKLKPAFKEGGTTTAGNSSQVSDGAAAVLLMKRALAIQKGLPILGIFRSFAVAGVDPAVMGIGPAVAIPAAVKAAGLQTRDIDLFEINEAFASQFVYCVRKLELDPEKVNVNGGAMAFGHPLGATGARCVATLLHEMKRRGKDSRFGVISMCIGTGMGAAAVFERGGSVDPLSNTR*

Protein Length: 422

Fln nts: ACATGGGGGAACTCTGTCAAGTATCATAAGCGTGCAAGTAGGGACACTTGCTCGGAACACTGAAGACAACACAGCGGGGCAGAATCC_-_ATGGCTTCTGCATGTGCTGCTGGAGATAGTGCCGCTTATCAGAGAGTTGGTGACTTTGGTGATGATATTGTTATAGTAGCGGCTTACCGCACTCCCATTTGCAAGGCAAAACGTGGAGGCTTTAAGGATACTCATCCGGATGACTTGCTTGCAGCTGTTCTTAAGGGATTATTGGAGAAAACTGGAATCAATCCAGGTGAAGTTGGTGATATCGTAGTTGGTACAGTTCTTGCCCCTGGTTCTCAAAGAGCCAGTCAGTGTCGGATGGCTTCTTTTTATGCTGGATTCCCAGAGACTGTTCCTGTCAAAACTGTCAATAGGCAATGCTCATCTAGTCTTCAAGCAGTAGCAGATGTTGCTGCAGCGATTAAAGCTGGGTTTTATGATATTGGGATAGGTGCTGGATTAGAGACAATGACTATCGACTCAATGGCATGGGCGGGCCCGGTGAATCCAAGGAATGAAACTCACAAGCAAGCACAAGATTGCCTTCTCCCAATGGGTATAACTTCAGAAAATGTTGCTGAACGCTATGGAGTTTCACGACATGACCAAGATCAGGCTGCTGTTGAATCTCATAGGCATGCAGCTGCAGCAGTAGCTGCTGGGAGGTTTAAGGACGAAATCATCCCAGTAGAAACTAAGATTGTTGATCCTAAAACTGGAGAGGAGAAACATGTTACGATATCTGTTGATGACGGGATTCGACCAGATACTAGCCTTTCTATTCTAGCAAAACTTAAACCTGCCTTCAAGGAGGGTGGAACGACAACTGCAGGGAACTCAAGCCAAGTGAGCGATGGAGCTGCTGCTGTCCTCCTAATGAAAAGGGCACTAGCAATTCAGAAGGGCTTACCTATTCTTGGTATATTCAGGAGTTTTGCAGTTGCTGGGGTTGATCCAGCTGTTATGGGAATTGGCCCAGCTGTTGCAATTCCAGCAGCAGTCAAGGCAGCTGGCCTTCAAACAAGGGATATTGATCTTTTCGAGATTAATGAAGCCTTTGCTTCACAATTTGTATACTGCGTTCGAAAATTAGAATTGGATCCTGAAAAAGTGAATGTTAATGGAGGAGCGATGGCTTTTGGTCACCCACTTGGTGCAACGGGTGCTCGTTGTGTTGCCACATTATTACACGAAATGAAAAGGCGTGGCAAAGACAGCAGATTTGGAGTAATTTCAATGTGCATAGGCACTGGAATGGGTGCAGCAGCAGTTTTTGAGCGTGGGGGTTCTGTGGATCCCTTGAGTAACACTCGTTAAGTCAAAGCTAATGGTCTTTTGTCAAAGGATGCACTGTAAAAAGTGTCTTACCATAGTAGATTGGTCTACAGTGGCGTTGTCCCTGGTTTCCACTCAAATATGGCACTTTTTAACAAACATTTATTATAACTGTGCAGTGTTTTTCAAATAAATTATTTTCTAAAGGTTGGATCTCTTCTTATCCAAGCAGGTTATGAAGTCTATCTCAATATGTAAGCAGTAGGTGGAGAAACTAAACAATTTGAAATTGTTATAAAATGAGAATTCTTTAATGTTTATGTTCACAGTATCTGCTGCATCCTTAATAATGATTAATGGTTTGTGAGGAATGTGCCTTACGATTTAAAATAAAGTGACTG

Fln Alignment:

Contig16547___YQRVGDFGDDIVIVAAYRTPICKAKRGGFKDTHPDDLLAAVLKGLLEKTGINPGEVGDIVVGTVLAPGSQRASQCRMASFYAGFPETVPVKTVNRQCSSSLQXXXXXXXXXXAGFYDIGIGAGLETMTIDSMAWAGPVNPRNETHKQAQDCLLPMGITSENVAERYGVSRHDQDQXXXXXXXXXXXXXXAGRFKDEIIPVETKIVDPKTGEEKHVTISVDDGIRPDTSLSILAKLKPAFKEGGTTTAGNSSQVSDGAAAVLLMKRALAIQKGLPILGIFRSFAVAGVDPAVMXXXXXXXXXXXXXXAGLQTRDIDLFEINEAFASQFVYCVRKLELDPEKVNVNGGAMAFGHPLGATGARCVATLLHEMKRRGKDSRFGVISMCIGTGMGAAAVFERGGSVDPLSNTR*VKANGLLSKDA
C0PQ57_______________YERAAEFGDDVVIVAAYRTPICKAKRGGFKDTLPDDLLAPVLKALIDKTGINPNEVRDIVVGTVLAPGSQRASECRMASFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTANPMAWEGSVNPRVEIFKQAQDCLLPMGITSENVAERYGISRQDQDQAAVESHRRAAAATAAGKFKDEIIPVETKIVDPKTGDEKPVRISVDDGIRPTASLSDLAKLKPAFKKGGSTTAGNSSQVSDGAGAVLLMKRTVAMQKGLPILGVFRSFTAVGVDPAVMGVGPAVAIPAAVKAAGLEIDDIDLFEINEAFASQFTYCSQKLELDPEKVNVNGGALALGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGSAVDQLCNARPIKDHTSLSKDA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
975	88		11		0.923564
1659			50	50	1.0
1685	5		85		0.999793
1687		10	5	84	0.999846
1689		88		11	0.999937
1706		16	16		0.988813

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain