SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16542

Length: 809 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16542

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING zinc finger protein-like [Oryza sativa Japonica Group] dbj\|BAD19854.1\| RING zinc finger protein-like [Oryza sativa Japonica Group] dbj\|BAG89963.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	5.0e-23	70%
FL-Next	tr=RING zinc finger protein-like; Oryza sativa subsp. japonica (Rice).	-	-	0.0	70%
Blast2go	protein	-	-	3.3492e-27	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.3492e-27	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
218	83	16			0.994512
223		50		50	1.0
272		15	7	76	0.999983
273		7	23	69	1.0
277		84	15		0.999986
280	14	78			0.999974
284	85		14		0.999981
286		14		85	0.999981
330	40		60		1.0
341		40		60	1.0
359	42	57			1.0
604		14		85	0.993533
605	14		85		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain