SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16457

Length: 463 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene16457
CGTCGTGACCTTGGCTGTCACTCATCGTTTGCTTCCTTCTCGACAGTTTGGGTTCATTGTGCTGACAACATCTGCCGGCATCATGGATCATGATGAAGCCAGGAGAAAGAATGCTGGTGGAAAAATTTTGGGTTTTTTCTATTAGAGGCATTTAGTGCTATTATACTCTGTGGAGGTTAGGAATGGTTTTCATGGTGGTTATTATTGAGAGGAAACAATTTTTGAAGAATTTTAACATTTTTGTATTCAAATTAAGAATTTGACGTTCATATTTGGAGTTGAACTTAAGACCTTCCTTTGGGTTGAAACTTGACGTCCGTGAAATTTGATCTCTGTAGTTTCTTGTCTTCCATTATCTTCCAGAAAATTATTTGGGTTTTGATAATATGCTGGGACTGCCATACACTTCTATGCTCACTAAATGTGATTTGGAGCTAGTTAAATTTAATCTTTGTATATGCTT

Ace file of the UniGene sp_v2.0_unigene16457

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S15a-4 [Arabidopsis thaliana] sp\|Q9LX88.3\|R15A4_ARATH RecName: Full=40S ribosomal protein S15a-4 emb\|CAB90931.1\| cytoplasmic ribosomal protein S15a-like [Arabidopsis thaliana] gb\|AAK76511.1\| putative cytoplasmic ribosomal protein S15	-	-	5.0e-14	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	40s ribosomal protein s15a	-	-	1.67372e-18	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	1.67372e-18	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8	IPR000630	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN71

Fln msg: your sequence is shorter than subject: 48 - 130

Fln protein: VVTLAVTHRLLPSRQFGFIVLTTSAGIMDHDEARRKNAGGKILGFFY*

Protein Length: 49

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTTTGCTTCCTTCTCGACAGTTTGGGTTCATTGTGCTGACAACATCTGCCGGCATCATGGATCATGATGAAGCCAGGAGAAAGAATGCTGGTGGAAAAATTTTGGGTTTTTTCTATTAG___AGGCATTTAGTGCTATTATACTCTGTGGAGGTTAGGAATGGTTTTCATGGTGGTTATTATTGAGAGGAAACAATTTTTGAAGAATTTTAACATTTTTGTATTCAAATTAAGAATTTGACGTTCATATTTGGAGTTGAACTTAAGACCTTCCTTTGGGTTGAAACTTGACGTCCGTGAAATTTGATCTCTGTAGTTTCTTGTCTTCCATTATCTTCCAGAAAATTATTTGGGTTTTGATAATATGCTGGGACTGCCATACACTTCTATGCTCACTAAATGTGATTTGGAGCTAGTTAAATTTAATCTTTGTATATGCTT

Fln Alignment:

Contig16457___THRLLPSRQFGFIVLTTSAGIMDHDEARRKNAGGKILGFFY
A9NN71_______________TARLLPSRQFGFIVLTTSAGIMDHDEARRKNAGGKILGFFY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain