SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16151

Length: 1790 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16151

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	polyubiquitin containing 7 ubiquitin monomers [Zea mays]	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	ubiquitin	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	96%
Blast2go	aging	GO:0007568	Biological Process	96%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	96%
Blast2go	intracellular part	GO:0044424	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: your sequence is shorter than subject: 392 - 458

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKNIFVKNLTGKTTTLEVESSDRIDNVKAKIQDKEGIPPDQQRLIFSGKQLEDGRTLADYYIKKESTLYLVDVVSYCNGLQCK*

Protein Length: 393

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATATTCTCGGGTGCGTTCTCATATCTTAGCGGCACGGTTTTAGAGCTCTTCGTTTACGGGTCTTCATTACCTTTATATCGTTTTCAAG_-_ATGCAGATCTTTGTTAAAACTCTCACTGGTAAGACGATCACCCTCGAGGTTGAAAGCTCTGACACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTGATCTTTGCAGGAAAGCAGCTAGAAGATGGCCGAACACTGGCCGACTACAATATTCAGAAGGAATCTACCCTGCACCTCGTGCTTCGTCTTAGAGGTGGCATGCAGATCTTTGTCAAAACCCTAACAGGCAAGACAATAACTTTGGAAGTTGAGAGCTCAGACACCATTGACAATGTTAAGGCCAAGATCCAGGACAAGGAAGGTATTCCACCTGACCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTCGAAGATGGTCGAACCCTTGCCGACTACAATATTCAGAAGGAATCCACCTTGCACCTTGTGCTCCGTCTGAGAGGCGGCATGCAAATATTTGTTAAAACCCTCACTGGCAAGACAATAACTTTGGAGGTTGAGAGCTCAGACACCATTGACAATGTCAAGGCCAAGATACAGGATAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAAGACGGGCGAACACTTGCTGATTATAATATACAGAAGGAATCTACCCTGCACCTCGTCCTCCGTCTAAGGGGTGGCATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACAATCACTTTAGAGGTTGAGAGCTCAGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATACCTCCTGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTACAATATTCAGAAGGAATCGACCCTGCACCTTGTTCTTCGTCTGAGAGGTGGCATGCAAATTTTTGTGAAAAACATTTTTGTGAAAAACCTTACTGGGAAAACCACTACTTTGGAGGTGGAGAGCTCAGATAGGATTGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAACAAAGGTTGATATTTTCTGGTAAGCAGTTGGAAGATGGACGTACCCTGGCTGATTATTACATCAAGAAAGAGTCAACTCTGTACCTGGTTGACGTCGTTTCGTACTGCAATGGTTTACAATGCAAGTAG___TTAATTCTTTTTGGATACAAAGAGACTATATCCGTTATATCATATGCATAAAATTTTCTTAAAAGATGAAGATTTCGAATGCATCTGTTATTTAAGTATCTCCATCAGTGAGAGAAGTTTCAAGTAGATTATTATTGTTTCTAACTTAAATGCATAACGTTATTTATTCCCAAGTTATTTTATGAAGATTCGGCTGTGGGATTCTGTTACTGGTCAATTTGAAAACCCATCTTTAGTAACTAAGTTCTGTCTGAAGACTTTGTTTCCATCCAACCATTTCCGAGACTTTATCTACTTTTTAATGGCATTTTTTTGGCAACGGAATGGACGATCTAACCATTTTTAAATGCGTTGTTTGCCAAACAATTGGACCATCTAGCTTCTTTTTACGTGCGTCGTTTGCCAACCAATTGGACAATCTTGTCACAGGTTCTTATCGGATCCGATAATATTATCGGATGGGATAATATAATGGGGGATATGCACTGATATTTTGTTA

Fln Alignment:

Contig16151___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKNIFVKNLTGKTTTLEVESSDRIDNVKAKIQDKEGIPPDQQRLIFSGKQLEDGRTLADYYIKKESTLYLV
C0PSZ6_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ-----IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
44			16	83	0.994512
75	50	50			1.0
77			36	63	1.0
592	10	90			0.90298
593		90		10	0.90298
1091	25		75		0.996473
1150		90	10		0.90298
1151		90	10		0.90298
1415			92	7	0.999664

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain