SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16118

Length: 1555 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16118 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3584 multi-domain protein	-	-	2.0e-09	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	uncharacterized protein	-	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRN7

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 297 - 317

Fln protein: MAGRGRMPPPFARHLQGPGMGPEMYGPAMGPPAGHHPLDMLPPPEVLEHKLATQSAEMQRLATENQRLAATHGALRQDLVMSQRELERLHSHIAAMQNDKDQQIRSFLDKIANMEADLRASESIKAELQQARSDSQSLQSTRQDLNVQVQQLNQELQRAHAEVQQIPAMHAEIEALRQELQRGRAAFEYEKATSSEQAEQMQGMEKNLVSLAREVEKLRSELGSIDKRGRGAPYGGAYSGPDAPYPPVGQNVYGDGYGMPQMPPAGPEAVAPYAAGGGPGWGGYDVPRGGGPHVRR*

Protein Length: 298

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCTTCAAACTGGAAACACAATCCTAAACATTAGGGCTGACCGAACGCTAACCGGCAGAAGATCTACTGAAGCTACCCGGCGACCGGCTTGAAGGCGGAGTTGTGTAAACCCCAATATTAGGGTTTTACTAGTCTAATCTATTGATCGTACCCACAGTATAAAGTCGCATCTTTTCGGCCAAAATTTGATTTTTCCTACAGCATCCACATTGCTTCCTCAGTCCTTGTCACAATCGACTGGGAGAGGAATTTGTATAGACAAAGAG_-_ATGGCTGGTAGAGGTCGCATGCCACCCCCTTTTGCTAGACACCTTCAAGGCCCAGGCATGGGGCCTGAGATGTATGGTCCAGCCATGGGACCCCCTGCAGGTCATCATCCTTTGGATATGTTACCACCGCCAGAAGTGTTGGAACATAAGCTTGCAACACAAAGTGCAGAGATGCAAAGGCTTGCAACAGAAAATCAAAGGTTAGCTGCAACACATGGAGCTTTGAGACAAGATCTTGTTATGTCACAACGTGAACTGGAGCGATTGCATTCGCATATTGCAGCTATGCAGAATGATAAGGATCAGCAAATTAGAAGTTTTTTGGACAAAATTGCAAATATGGAGGCAGATCTCCGGGCTAGTGAATCTATCAAGGCGGAGTTGCAACAAGCTCGTTCTGATTCACAGAGTCTTCAATCAACTAGGCAAGATTTAAATGTACAAGTGCAACAGCTAAATCAAGAATTGCAGCGAGCCCATGCAGAAGTTCAGCAGATTCCTGCTATGCATGCAGAAATAGAGGCCTTAAGGCAGGAGCTTCAACGTGGAAGGGCCGCATTCGAGTATGAAAAGGCTACTAGCAGTGAGCAAGCTGAGCAGATGCAGGGGATGGAGAAGAATTTAGTCTCTCTGGCAAGAGAAGTGGAGAAACTTCGTTCAGAGCTTGGAAGTATTGACAAAAGAGGCCGTGGTGCACCATATGGTGGTGCTTATAGCGGCCCTGATGCTCCCTACCCTCCTGTTGGCCAAAATGTGTATGGAGATGGCTACGGTATGCCTCAGATGCCTCCTGCTGGACCTGAAGCTGTTGCTCCTTATGCTGCCGGAGGTGGTCCTGGGTGGGGAGGATATGATGTGCCACGTGGGGGTGGCCCACATGTTCGTAGATGA___GCCACGTTGGACCTTTTTTTGAATGAAAAACGCATTCTAGAATAGGCTAATTTCAGCTGTTACTTCTTCGCTGCATCGGAAATTTCCGGGTAGGGATCATAGACTTAAATTGGATGGTTGTGCAAGGGTTTTGTTTTCAGTAGCAGCCTTGTTCATTCTCTAGCTTCTGGTAGAGTAGGTTAGATATTACATGAATGGCTCTCAACGCTTGGTACAGGTCATTGAAATCCCAAGGAGGATTTATTTTACTAGTAAATTTTAATCTGAGTGTTGGATCTGATATTAAACTCAAATTATCATGCACACCCTTTGGGGAAGTTTTGTTTACAAAATGATTTGATTGCAATTCAAAGTTATAAATTATTTTGTT

Fln Alignment:

Contig16118___MAGRGRMPPPFARHLQXXXXXXXXXXXXXXXXXXXXPLDMLPPPEVLEHKLATQSAEMQRLATENQRLAATHGALRQDLVMSQRELERLHSHIAAMQNDKDQQIRSFLDKIANMEADLRASESIKAELQQARSDSQSLQSTRXXXXXXXXXXXXXXQRAHAEVQQIPAMHAEIEALRQELQRGRAAFEYEKATSSEQAEQMQGMEKNLVSLAREVEKLRSELGS-IDKRGRGAPYGGAYSGPDAPYPPVGQNVYGDGYGMPQM
B8LRN7_______________MAGRDRMPPPFARHLPGPGMGPEMYGQVMGPPAGHRPLDLLPPPEVLEHKLATQHAEMQRLASENQRLAATHGALRQDLVMSQHELERLRSHIAALQNDKEQQIRSSLDQIANMEADLRSSESIKADLQQARSDAQNFLSVRQDLTVQVQQLTQDLQRAHAEVQQIPAMHTEIDGLRQELQRGRDAFEYEKAASSEQAEQMQGMEKNLVSLAREVEKLRSELASAVDKRGRAAPYGSAYSGPDAPYPPVGQNVYGDGYGMPQM

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
187			88	11	0.923564
207		87	12		0.992554
304	88		11		0.923564
334		22	77		0.999999
336	77			22	0.999999
509	77			22	0.999999
510			11	88	0.923564
511	11			88	0.923564
512			11	88	0.923564
513			11	88	0.923564
947			12	87	0.992554
949			12	87	0.992554
966		10		90	0.90298
1154	96		3		0.993591
1169	4		96		0.99411
1303	96			3	0.993037
1305			96	3	0.993591
1308	3			96	0.993591
1312			96	3	0.993591
1318	96			3	0.993591
1337	94	5			0.9982
1339	18			72	1.0
1532		14	7	64	0.999978
1533	7	14	78		0.999974
1534	78	14	7		0.999974

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain