SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15963

Length: 1247 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15963

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	probable xyloglucan endotransglucosylase hydrolase protein 23	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED5

Fln msg: Overlapping hits, possible frame ERROR between 573 and 572,

Fln protein: MDTPLHLLFLLLASSAALASANFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLDSGREQQFYLWFEPTLDFHTYSVLWTSNxxLIFSVDGSPIRVFKNRETELGKVDSNYHYPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVATFRNFNAAATSSFDAAAEEVALESNQEQRQRLQWVRKNYMIYDYCADTKRFPQGPPPECK*

Protein Length: 279

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTACCATCAACAGCGACAATTTATCTCTTCTCTCGTTTCTGGAACTGCTGCTCCGCATCACAAACTCTTTTCCCAATCCCTAATCGACATCGAC_-_ATGGACACACCTCTTCACCTCCTCTTTCTTTTATTGGCCTCCTCGGCAGCTCTTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGTAATGATCGTGCTAAAATCATTGACAATGGACAACAGTTGCAGCTTACTCTTGACCGCTCTTCTGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACCGGGCAACTCTGCAGGCACAGTCACTACTTTTTATCTATCATCTCAAGGTCCCAAACACGACGAAATAGATTTCGAATTTCTGGGCAACCTCTCTGGAGATCCTTATATTTTGCACACTAATGTCTTTGCTCAAGGCCTTGACaGTGGCCGTGAACAACAATTCTACTTGTGGTTCGAACCAACCCTGGATTTCCACACTTACTCCGTGCTCTGGACATCAAACxxxxxxcTCATATTTTCTGTAGACGGGAGTCCTATTCGGGTGTTTAAGAACAGGGAGACAGAGTTGGGCAAAGTGGATAGCAATTATCATTATCCCAAAACCCAAGCAATGAGGGTCTACTCCAGCCTTTGGAACGCAGATGATTGGGCAACCAGGGGTGGGCTTGTGAAGACCGACTGGACTAAAGCTCCCTTTGTTGCAACCTTCCGCAATTTCAATGCTGCCGCTACTTCTTCTTTTGACGCCGCCGCAGAGGAGGTGGCTTTGGAATCGAACCAAGAACAGAGGCAGAGGCTCCAGTGGGTACGAAAGAACTACATGATCTACGATTATTGTGCAGACACCAAGAGATTCCCCCAGGGACCGCCTCCCGAATGCAAATAA___AACCTCAATCCTTTGAATTCAGAGAATGAACTCTGAATTCTTTCCTTCCAAGTATTCTCATTCATTTCTATTACATTAATTCTTTCATTCTTTCTCAGACACACATGTAAAATATTAGAGGGTATCAATCATTTCATTTTGGTACTGGTATACAAAAGCGGGATTCTTTTGATGATTCATCAATGGCTACAGCGTTTCCTTTTTGGTTACCGCATGTTCGCGTTTTACTCTTTTCTGAAAAACACACATACAAAGGCATTGATATATATATATTTGACAAAATTTAGGATTTAAC

Fln Alignment:

Contig15963___IDMDTPXXXXXXXXXXXXXXXXXNFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLDSGREQQFYLWFEPTLDFHTYSVLWTSNxLIFSVDGSPIRVFKNRETELGKVDSNYHYPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVATFRXXXXXXXXXXXXXXEEVALESNQEQRQRLQWVRKNYMIYDYCADTKRFPQGPPPECK
D5AED5_______________MDMYTPFLLLFLLLTFSAALVSSNFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGL-GNREQQFYLWFDPTLDFHTYSVLWTSNxIIFSVDGTPVRVFKNRETELGNVDTNYHYPKNQAMRIYSTLWNADDWATRGGLVKTDWTKAPFVASFRNFNAATSSSSDSAAEE-ALDSNQE--QRLQWVRKNYMIYNYCADTKRFPQGLPPECK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
561			16	83	0.994512
562			83	16	0.994512
566	83	16			0.994512
568		83		16	0.994512
569	83		16		0.994512
570	83		16		0.994512
571	83	16			0.994512
572		83		16	0.994512
573		83	16		0.994512
574	66			16	0.988813
575	83	16			0.994512
577	33	16			1.0
604	25		75		0.996473
714		14		85	0.993533
725	11		77		0.968132
1114		16	66		0.988813

SSRs (tot: 1)

Start position	End position	Sequence	Length
1214	1225	AT AT AT AT AT AT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain