SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15871

Length: 1632 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15871 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] dbj\|BAB03120.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL85976.1\| unknown protein [Arabidopsis thaliana] gb\|AAM67536.1\| unknown protein [Arabidopsis thaliana] dbj\|BAD94504.1\| hypo	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	heterogeneous nuclear ribonucleoprotein	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Bacterial Ig-like, group 2	IPR003343	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVM3

Fln msg:

Fln protein: MDSSEDQKTQDVHPTEDNNEEHEENVADEQKEDKNNATSRDDSSPGKIFIGGLSKSTTTAAFTKHFSKYGELTDSVIMRDRLSGQPRGFGFVTYADPSVVDKVIEDKHVLDGKTVEIKRTIPRGNTSKGPKTKKVFVGGIPTSITEDEFKDYFTKFGKVVEHQIMQDRNTGRSRGFGFVTFDSEQVVEEIISQGKMIELGGKQVEIKKAEPKKPLPDAGPIYGIDSRPPYVAGGVGGFRDSYSGFGGAGYGSNPYRSAGGYGGRPGGYAGYGGSEYGRGYGGYGGGSLGGFEEEPSRGYGGRLGPYGDGFGGYGSGMIGSYGGGGDGYGAYGDSGYGGSFDSSRVGGAYGSGGAYGGGRGAYGGSTNGRYHPYAR*

Protein Length: 377

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCTCCCTAGCAAAATCCCCCTTTTGTTATGCAACGCTTTTGTAACCGCATCTAGGGTTGTTAGGGTTTTCAGATACTCTTAGTATTTTCTGCCCTTTTTGCGAGATCTAAAGAGCTTTTCGGCTTTTCTTCTCTCCAGTGGTGTGTTATTTCGTCCCC_-_ATGGATTCTTCAGAGGACCAGAAAACACAGGATGTGCATCCTACTGAGGATAACAATGAAGAACACGAAGAAAACGTTGCAGATGAGCAGAAGGAAGACAAGAACAATGCTACTTCTAGAGATGATTCCAGTCCAGGAAAAATCTTTATCGGTGGTCTTTCAAAGAGTACGACTACAGCTGCTTTTACAAAGCATTTCAGTAAGTATGGGGAACTAACCGACTCAGTTATAATGAGAGACCGTCTCTCGGGCCAGCCTCGGGGATTTGGGTTTGTGACTTATGCTGACCCGTCTGTCGTGGACAAGGTTATAGAGGACAAGCACGTCCTTGATGGCAAAACGGTGGAAATCAAAAGAACCATTCCAAGAGGTAATACATCCAAGGGTCCAAAGACGAAAAAGGTTTTTGTGGGCGGTATACCCACATCTATTACTGAAGATGAGTTCAAGGACTACTTCACGAAATTTGGCAAAGTTGTAGAACATCAGATTATGCAAGATCGAAACACTGGCCGCTCCAGGGGTTTTGGTTTTGTCACTTTTGATAGTGAGCAGGTTGTAGAAGAAATCATATCTCAAGGCAAGATGATTGAGCTAGGTGGAAAGCAGGTGGAGATCAAGAAGGCCGAACCCAAGAAACCTTTGCCTGACGCTGGTCCCATTTATGGGATTGATAGTAGGCCTCCCTACGTTGCTGGTGGAGTTGGGGGCTTCAGGGATAGTTATAGTGGGTTTGGAGGGGCAGGTTATGGCAGCAACCCGTATAGGTCGGCGGGAGGTTATGGTGGTAGGCCTGGAGGGTACGCTGGTTACGGAGGTTCTGAATATGGTAGGGGTTATGGAGGTTATGGGGGTGGCAGTTTAGGAGGCTTTGAAGAAGAGCCTTCCCGTGGCTATGGAGGTCGTCTTGGACCTTATGGCGACGGGTTTGGTGGCTATGGCAGTGGGATGATTGGTAGTTATGGAGGTGGAGGTGATGGTTATGGTGCCTATGGTGATAGTGGTTATGGCGGCAGCTTTGACTCATCACGTGTTGGTGGTGCGTACGGCAGTGGTGGTGCTTATGGGGGTGGCAGGGGAGCCTATGGGGGTAGTACCAATGGACGATATCACCCATATGCCAGGTAG___AACAATCAGCATTGGAATCTACCTAAGCAATAGGCATTGGCGGCAGATACCGAAGTGAGCTTTAGAGCTCTAAGCATTTCTAGATATTTACTCTGTAGGATTTTAGTTTATTGAGACACAAATATACTATTTTTGTCATCTGTACGATGTATTTGAAGGTTCATTTCTGCAGCGTTCAAACGTCTAAGTAGTTCTGTATTTCTATTGTGGACTACTAGATTGTCTCGAGACACAATTCAGTCAATGTTAACTGATTTTAACTAATTATAGTTAACTACATTATAACGTTTTGGGGAATAATACCTGTTTTTGGTTGGAT

Fln Alignment:

Contig15871___MDSSEDQKTQDVHPTEDNNEEHEENVADEQKEDKNNATSRDDSSPGKIFIGGLSKSTTTAAFTKHFSKYGELTDSVIMRDRLSGQPRGFGFVTYADPSVVDKVIEDKHVLDGKTVEIKRTIPRGNTSKGPKTKKVFVGGIPTSITEDEFKDYFTKFGKVVEHQIMQDRNTGRSRGFGFVTFDSEQVVEEIISQGKMIELGGKQVEIKKAEPKKPLPDAGPIYGIDSRPPYVAGGVGGFRD
A9NVM3_______________MDSSKDQKTQDEHSNEDDNTEQEENVVEEQKEDKNNDTSREASSPGKIFIGGLSRSTTTVVFTKHFSKYGELTDSVIMKDRHTGQPRGFGFVTYADASVVDKVIEDKHILDGRTVEIKRTIPRGNTSKGPKTKKIFVGGIPTTITEDEFKDYFSKFGKVAEHQIMQDRSTGRSRGFGFITFDSEQVVEEIISQGKMIELGGKQVEIKKAEPKKPSSDAGPVHGIDNRPPYIPGGVGGFRD

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
648	9	90			1.0
656		93		6	0.999264
1045		82		17	1.0
1046		82	17		1.0
1047	17			82	1.0
1048			17	82	1.0
1050			17	82	1.0
1051	17			82	1.0
1053	17		82		1.0
1054			17	82	1.0
1056		17		82	1.0
1057	17			82	1.0
1058	17			82	1.0
1061	82			17	1.0
1063	17	82			1.0
1065			16	83	1.0
1066	16			83	1.0
1067		16	83		1.0
1112	43		56		1.0
1136		13		86	0.999973
1140	86			13	0.999973
1141		86	13		0.999973
1142	13	86			0.999973
1143		13		86	0.999973
1144	13			86	0.999973
1146		13		86	0.999973
1147		86	13		0.999973
1148	26	73			1.0
1149	86		13		0.999973
1150		73	13	13	0.999956
1152	85			14	0.999981
1156	85	14			0.999981
1158	14		85		0.999981
1167			16	83	0.999991
1169	83	16			0.999991
1187	10	90			0.90298
1188		77		22	0.999999
1194	20			80	0.999996
1196		20	80		0.999996
1208	11		88		0.923564
1454	2	97			0.975753
1480	91	1		4	0.997977
1496			4	95	0.999983
1497	4			95	0.999983
1498		4		95	0.999983
1502		4		95	0.999981
1504	4			95	0.999981
1505	4	95			0.999981
1509	95	4			0.999984
1510	95		4		0.999984
1512	95	4			0.999984
1542		91	7		1.0
1543	7	91	1		1.0
1544		91	8		1.0
1546	91	1	7		1.0
1549	91		1		1.0
1551		92	7		1.0
1554	7			92	1.0
1557	90		7		1.0
1559	9		89	1	1.0
1562	9		90		1.0
1563		9		90	1.0
1564		1	7	90	1.0
1567	94		3		0.924724
1571	3		96		0.988113
1573	3		96		0.987242
1574	3			96	0.987242
1583	94		1		0.951749
1596			3	96	0.991825
1609	24	6			1.0
1611		4		96	0.99411
1612		4	96		0.99411

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain