SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15855

Length: 585 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15855 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative NAD synthetase [Oryza sativa Japonica Group] gb\|EAZ02899.1\| hypothetical protein OsI_25032 [Oryza sativa Indica Group] gb\|EAZ38815.1\| hypothetical protein OsJ_23220 [Oryza sativa Japonica Group]	-	-	1.0e-34	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	protein	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Nitrilase/cyanide hydratase	IPR003010	-	-
Sma3	NAD synthase	IPR003694	-	-
Sma3	Glutamine-dependent NAD(+) synthetase	IPR014445	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
151			28	71	1.0
154	85		14		0.993533
172	88			11	0.923564
271		90		10	0.90298
295	83		16		0.999991
388		90	10		0.90298
390	90		10		0.90298
391	90			10	0.90298
392		90	10		0.90298
394	10		90		0.90298
396		10		90	0.90298
397		10		90	0.90298
398	10		90		0.90298
399	10			90	0.90298
400		90	10		0.90298
401		90	10		0.90298
433	11		88		0.923564
436	11			88	0.923564
440		11	88		0.923564
441		11	88		0.923564
445	11			88	0.923564
448		11		88	0.923564
454	11		88		0.923564
464	77	22			0.999999
465		22	77		0.999999
467			77	22	0.999999
505	20	80			0.995493
508	25	75			0.996473
513	25		75		0.996473
516	75			25	0.996473
518	75			25	0.996473
520	33		66		0.997452
521	33		66		0.997452
522		66		33	0.997452
523		66	33		0.997452
524	66			33	0.997452
527		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain