SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15848

Length: 1029 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15848 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADPH quinone oxidoreductase-like protein [Solanum tuberosum]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	quinone oxidoreductase	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Quinone oxidoreductase putative, PIG3	IPR014189	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRL3

Fln msg: your sequence is shorter than subject: 268 - 325

Fln protein: RRDLDCHSGIIEAVGKNVQTWKVGDEVCALLGGGGYAEKVAVPSGHVLPVPKGISLQEAAAIPEVACTVWSTVFMTSHLSKGENFLVHGGSSGIGTFAIQIAKYYGARVFVTAGSEEKLARCKELGADVAINYKTEDFVARVKEETGGKGVDVILDNMGGSYLKRNLDALCLDGRLFLIGFQGGIVTEINLSTIFAKRLTIQAAGLRVRSKENKEQIISDVLKHVWPAFEEGKVKPIIHTSLPLSQAAQAHRLMESSTHIGKILLTV*

Protein Length: 269

Fln nts: CGTCGTGACCTTGACTGTCACTCAGGCATTATTGAAGCTGTCGGCAAAAATGTACAGACCTGGAAAGTTGGCGATGAGGTTTGTGCACTCCTGGGAGGAGGTGGGTATGCAGAAAAGGTGGCAGTTCCATCTGGGCATGTCTTGCCTGTTCCGAAAGGAATTTCATTACAAGAAGCTGCAGCCATTCCTGAGGTGGCATGCACTGTGTGGTCTACAGTTTTTATGACAAGTCATCTGTCCAAAGGCGAGAACTTTCTGGTGCATGGGGGCTCCAGTGGGATTGGAACATTTGCTATTCAAATAGCAAAGTATTATGGAGCAAGAGTGTTTGTTACAGCTGGAAGCGAGGAAAAATTAGCACGTTGTAAGGAGCTTGGTGCTGATGTGGCAATAAATTACAAAACAGAAGATTTTGTTGCACGAGTAAAAGAAGAAACAGGAGGAAAAGGTGTTGATGTAATATTAGATAATATGGGCGGCTCTTATCTGAAGAGGAATTTAGATGCTTTGTGCCTTGATGGGAGGTTATTTCTTATTGGTTTTCAAGGGGGTATTGTTACAGAGATCAACTTGTCAACTATATTTGCAAAGCGCCTTACTATCCAAGCCGCGGGATTGAGGGTTCGCTCTAAAGAGAACAAAGAACAAATCATCTCTGATGTTCTCAAGCATGTTTGGCCTGCATTTGAAGAAGGAAAAGTGAAGCCCATCATCCATACGTCACTTCCCTTGTCACAAGCTGCACAGGCCCACAGGCTTATGGAATCCAGCACACATATTGGAAAAATCCTGCTTACAGTATAG___CAGTTGTAAGTGAAGAGGGACGGAATAAGATATTCTTCCCATCTTTTTAGCAGTTGTAAGTGAAGAGGGACGGAATAAGATATTCTTCCCATCTTTTATTTTTTTTTTACAGAGGATATCTAAAATGAAACATCTTACACATTCTATCTAATATTTTTATATATCTATTGTTTTATAAATATTTCTTGCTGGGAACCCGGTTATTGAAATTCCGCTTAAATGATT

Fln Alignment:

Contig15848___LDCHSGIIEAVGKNVQTWKVGDEVCALLGGGGYAEKVAVPSGHVLPVPKGISLQEAAAIPEVACTVWSTVFMTSHLSKGENFLVHGGSSGIGTFAIQIAKYYGARVFVTAGSEEKLARCKELGADVAINYKTEDFVARVKEETGGKGVDVILDNMGGSYLKRNLDALCLDGRLFLIGFQGGIVTEINLSTIFAKRLTIQAAGLRVRSKENKEQIISDVLKHVWPAFEEGKVKPIIHTSLPLSQAAQAHRLMESSTHIGKILLTV
A9NRL3_______________LEC-SGIIEAVGKNVQTWKVGDEVCALLGGGGYAEKVAVLSGHVLPVPKGISLQEAAALPEVACTVWSTVFMTSHLSKGENFLVHGGSSGIGTFAIQIAKYYGARVFVTAGSEEKLARCKELGADVAINYKTEDFVARVKEETGGKGVDVILDSMGASYLQRNLDALGLDGRLFLIGFQGGTVTEINLSTIFGKRLTIQAAGLRVRSAENKEQIISDVHKHVWPAFEEGKVKPIIHTSLPLSQAAEAHKIMESSTHIGKILLIV

SNPs (tot: 92)

Position	A %	C %	G %	T %	Probability
337	25	75			0.996473
356	80		20		0.995493
409	91		8		1.0
414		94	5		0.998894
418		94	5		0.998894
421	5		94		0.998894
427	6			93	0.99903
431		6		93	0.99903
443	6			93	0.999264
461	86			3	1.0
463	3	10	3	82	1.0
464		10		89	1.0
465	10	3	86		1.0
467		6	10	82	1.0
468	3	82	13		1.0
471	10	3	3	82	1.0
472	3	10	85		1.0
473	3		10	85	1.0
475	85	11	3		1.0
476		88	11		1.0
482		91	8		0.999807
485	9	85			0.999726
486			9	90	0.999872
492	90		9		0.999872
507		83	5	11	0.999887
510		66	8	25	1.0
511	16	58	25		1.0
512	25	75			1.0
513	66		33		1.0
515		75	25		1.0
517	72	27			1.0
518	27		72		1.0
525	54	9	27	9	1.0
528	10	90			0.90298
529	90		10		0.90298
531		90	10		0.90298
532			30	60	1.0
534	60	40			1.0
535	70		30		1.0
536			14	85	0.993533
537		14		85	0.993533
539	14	71		14	0.984337
540	14		14	71	0.984337
541	14	71	14		0.984337
542			28	71	1.0
547	85	14			0.993533
548		28		71	1.0
549	85		14		0.993533
552	83		16		0.994512
553			83	16	0.994512
557	16	83			0.994512
559		83	16		0.994512
587	20			80	0.995493
588		20		80	0.995493
589	20			80	0.995493
590	20	80			0.995493
591		80		20	0.995493
592			20	80	0.995493
593	20	80			0.995493
594		80	20		0.995493
597		20		80	0.995493
598	20			80	0.995493
599			20	80	0.995493
601		20		80	0.995493
602	20			80	0.995493
603	20	80			0.995493
604			20	80	0.995493
605			20	80	0.995493
607		20		80	0.995493
610	20			80	0.995493
624		75	25		0.996473
625	25			75	0.996473
626			25	75	0.996473
630	25			75	0.996473
631		25		75	0.996473
632	25			75	0.996473
633			25	75	0.996473
634		25	75		0.996473
635		25		75	0.996473
638			33	66	1.0
639		16	16	66	0.988813
640			16	83	0.994512
641	83	16			0.994512
642	33			66	1.0
643		16		83	0.994512
645	16	83			0.994512
647	83		16		0.994512
769	83		16		0.994512
784		83	16		0.994512
790			16	83	0.994512
791	16			83	0.994512
800		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain