SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15662

Length: 1278 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15662 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proline-rich protein n=1 Tax=Pinus taeda RepID=Q9LLZ6_PINTA	-	-	7.9874e-44	71%
FL-Next	tr=Proline-rich protein; Pinus taeda (Loblolly pine).	-	-	0.0	89%
Blast2go	lipid binding	-	-	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	0.0	-
Sma3		IPR003612	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9LLZ6

Fln msg:

Fln protein: MKKVVALCFIFMIQVATNMAPIMATYPPVIPVGPGSGGSTPGGSAAKCPLNALKLGACVDLLQGLVHVGLGDPVVNQCCPLIQGVAALEAALCLCTTIRAKVLNLNVLLPIALSLVASCGLTVPPDFKCPAS*

Protein Length: 134

Fln nts: GAAAAAGTTTATTCCACTTACGGATCACATGCATCATAGAGATGTGTTCCCTCGAGCTCTATAAATCGTCATTCATGGCTCCCATCTACATTGGATAGTTGCAGGTTGCCCTATTGCATTTTCCTCCAATCCCTTGCACTGATACTGCGTATCAGAGAAATTAAGCAGGGAATCATTCAGA_-_ATGAAAAAGGTAGTAGCCCTATGTTTTATTTTCATGATTCAGGTAGCAACAAACATGGCTCCTATAATGGCGACGTACCCTCCCGTTATACCGGTTGGCCCTGGAAGTGGAGGCTCAACACCCGGCGGCTCTGCAGCAAAGTGCCCGTTGAATGCTCTGAAGCTGGGAGCCTGTGTTGATTTGCTACAGGGCCTGGTGCACGTAGGGCTTGGAGACCCTGTGGTAAACCAGTGTTGCCCGCTCATACAAGGCGTTGCGGCGTTGGAGGCAGCGCTCTGTTTGTGCACAACAATTCGTGCTAAGGTTCTTAATCTTAACGTACTCCTTCCAATCGCTCTTTCGCTCGTTGCATCGTGTGGCCTGACCGTTCCTCCAGATTTCAAATGCCCTGCTAGTTAA___GATAAGTTTCTGACAGGAAGCGCCATTGCTGAAATCAATGCAACTTCTGCAAGCTTGCCAGGCGCAACGAAATAAGAGAGAGAGAGAGATATTAGATATTATGATGCTTTGTGGTCTTTTGGGTCATTCATGGTTATTGTAGTTGGAGTGGGTGTGAGTAGATTGAATTTACCATTTGCAGATAATGGGGTGAAGATTGTTGTTGTGATGTATTACTACAAGGTTGTCATGCAGTATTGTTTTAGGGTTTTCTTGTATTATGATATGCTTTGATTCTGATTCCATCATGTGTATGACGACTCGCAGTCACAAACAAGCACTTTGTGCAATTCATTGGGTAGAAATCATTCACTGTCACTGTCACTGTCAAAATTCATGTGTTCTGCCCGTAGGTACTGTGAAAGAGACATTACCAGAACATCGCAGCGAGGTATCTGGTAAGTCAGATCGTCACAGTTACTCAAGATTGTTATTGGATAAATTAAGACTTTGTCATAAAGTTCATTGCGGTAAAAGACTTTGTTATTTGGGTAAAAAGCTCATTTCCCATCCTACAGTGATTTTGGAAGCGAAATGAGAATCTGCGTGCTTTGATTTTGATTTCTTGATGTGTATGACGGCTTGCAGTCACATGTTGAGATTCATTAGTACTTTCCGCATTCATTAGATCGAAAATAAATTAGTAGTTACCCGTACCA

Fln Alignment:

Contig15662___MKKVVALCFIFMIQVATNMAPIMAT-------YXXXXXXXXXXXXXXXXXSAAKCPLNALKLGACVDLLQGLVHVGLGDPVVNQCCPLIQGVXXXXXXXXXCTTIRAKVLNLNVLLPIALSLVASCGLTVPPDFKCPAS
Q9LLZ6_______________MKKVAALCFIFMIQVATNMAPIMAACSGYTCILPPVIPGGPGSGGSTPGGSTAKCPLNALKLGACVDLLQGLVHVGLGDPVVNQCCPLIQGVAALEAALCLCTTIRAKVLSLNVLLPIALSLVASCGLTVPPDFKCPAN

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
894		1		98	0.917783
896		98		1	0.917783
1094		3		90	1.0
1183	90	9			1.0
1184		3	3	87	0.993531
1185	8	84	8		0.998474
1186	8	83	8		0.998844
1189	81	9			0.999363
1190	13			81	1.0
1191			75	25	0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
330	350	TGACAG TGACAG TGACAG TGA	21
610	624	TC TC TC TC TC TC TC T	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain