SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15659

Length: 1305 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15659

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	brassinosteroid-regulated protein bru1	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED5

Fln msg:

Fln protein: MDTPLHLLFLLLASSAALASANFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPIRVFKNRETELGKVDSNYHYPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFSAATASSFDAAAEEAALESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPECK*

Protein Length: 275

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATCTACCATCAACAGCGACAATTTATCTCCTCTCTCGTTTCTGGAACTGCTGCTCTGCATCACAAACTCTTTTCCCAATCCCTAATCGACATCGAC_-_ATGGACACACCTCTTCACCTCCTCTTTCTTTTATTGGCCTCTTCGGCAGCTCTTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGTAATGATCGTGCTAAAATCATTGACAATGGACAACAGTTGCAGCTTACTCTTGACCGCTCTTCAGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACCGGGCAACTCTGCAGGCACAGTCACTACTTTTTATCTATCATCTCAAGGTCCCAAACACGACGAAATAGACTTCGAATTTCTGGGCAACCTGTCCGGAGATCCTTATATTTTGCACACTAATGTCTTTGCTCAAGGCCTTGGTGGGCGTGAGCAGCAATTTTACTTGTGGTTCGACCCAACCCTGGATTTCCACACTTACTCCGTGCTCTGGACATCAAACCAAATTATATTTTCTGTAGACGGGAGTCCTATTCGAGTGTTTAAGAACAGGGAGACAGAGTTGGGTAAAGTGGATAGCAATTATCATTATCCCAAGAGCCAAGCAATGAGCGTCTACTCCAGCCTTTGGAATGCAGATGATTGGGCAACCAGAGGTGGGCTTGTGAAGACCGATTGGACTAAAGCGCCTTTTGTTGCATCCTTCCGCAATTTCAGTGCTGCTACTGCTTCTTCTTTTGACGCCGCTGCAGAGGAGGCTGCTTTGGAATCGAACCAAGAGCAGAGGCTGGAGTGGGTGAGGAAGAACTACATGATCTACGATTACTGTGGAGACACCAAAAGATTCCCACAGGGACCGCCTCCCGAATGCAAATGA___ACCCTCAATTCAATTCCATTCCATTGAATTCAGAGAATGAATTCTTCTGGATACCTGACCCTTCCACCCATTCTTTCCTATTACATGATCTATTCTTTCATTCTTTTTCAGACACACATGACCTATTCTTTCATTCTTTTTCAGACACACAGAAAAAGAAACTTTCAATTATTCTTTCCTATTACATCTATTCTTTCATTCTTTGTCAGAAACACACAAACAGAAACGCATGTAACACAATCAATTCATTTTGGGTACTGGTAATACAAAATCGAGCTCGAGATTCTTTTGATGATTCAATGGCCACAACGTTGCCTTTATGGTTTTTCTGACAAACAGAAACGCATGTAACACAATCAA

Fln Alignment:

Contig15659___IDMDTPXXXXXXXXXXXXXXXXXNFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPIRVFKNRETELGKVDSNYHYPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFXXXXXXXXXXXXXXXXXXXXXXQRLEWVRKNYMIYDYCGDTKRFPQGPPPECK
D5AED5_______________MDMYTPFLLLFLLLTFSAALVSSNFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGTPVRVFKNRETELGNVDTNYHYPKNQAMRIYSTLWNADDWATRGGLVKTDWTKAPFVASFRNF-NAATSSSSDSAAEEALDSNQEQRLQWVRKNYMIYNYCADTKRFPQGLPPECK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
57		33		66	0.997452
83		66		33	0.997452
165		14		85	1.0
282	85			15	1.0
372		50	50		1.0
627	90		10		0.90298
1051	87			12	0.992554
1053	75	25			1.0
1143		89		10	0.999919
1198	59			40	1.0
1221	95		5		0.997749
1240		13		86	1.0
1247	11	17		64	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain