SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15567

Length: 840 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15567

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Chemocyanin; AltName: Full=Basic blue protein; AltName: Full=Plantacyanin; Flags: Precursor gb\|AAR84219.1\| chemocyanin [Lilium longiflorum]	-	-	3.0e-27	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	chemocyanin precursor	-	-	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Plastocyanin-like	IPR003245	-	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
369	11		88		0.999964
557		93	6		0.999532
566	6	93			0.999532
627		90		9	1.0
652	92		7		0.999664
675	85		14		0.999981
687		88	11		0.923564
688			11	88	0.923564
704		87		12	0.992554
739		16		83	0.994512
757	83		16		0.994512
761			16	83	0.994512
790		25	75		0.996473
791		25	75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain