SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15558

Length: 2388 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene15558
CGTCGTGACCTTGGCTGTCACTCAGTCTGTAAATTCTTCGCTCCGAATCCATCTTTTTGCGACAAGGGTTTCGTTTCGGCGTTTTTCTCGTCTGTAACTTCTTCGCTCCGTATCCATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGTGTTTTTCTCGTCTGTGTTTTCGTTAAGCTTTCGAGGAGAAATCATGGCGGAAGCTGGTGAAGTTGAGACCTTTGCCTTCCAGGCTGAGATCAACCAGCTTTTGAGTCTTATTATCAACACTTTTTACAGCAACAAGGAAATTTTTCTTAGAGAGATCATCAGCAATTCCTCAGATGCTTTGGACAAGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGCTGGATGCACAACCGGAACTGTTTATTCACATTATTCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAGTTTATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTGGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGGTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTATTAAGAAGCATTCAGAGTTCATCAGCTATCCTATATCTCTCTGGACTGAGAAGACTACAGAGAAGGAAGTTTCAGATGATGAGGAGGAGGAGGGAAAGGAAAAGAAAGAGGAAGAAGGCACTGTTGAGGAAGTGGATGAAGAAAAGGAGAAGGAATAGTAGAAGAAGAAGAAAATCAAGGAAGTTTCACATGAATGGAGTCTTGTGAACAAACAGAAGCCTATCTGGATGAGAAAACCAGAGGATATTACGAAGGAAGAATATGCGGCATTTTACAAGAGTCTGACAAATGACTGGGAAGAACACTTGGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCACCGTTTGATCTCTTCGATACCAAGAAGAAGTTAAATAACATCAAGCTCTATGTCAGGCGTGTATTCATCATGGACAACTGTGAAGAGTTGATCCCGGAATACCTTAGCTTTGTAAAGGGTGTCGTGGACTCTGAAGACCTTCCTTTGAATATTTCTCGCGAGACTCTCCAACAAAACAAAATATTAAAAGTTATTAGGAAGAATCTTGTCAAGAAGTGTGTAGAGTTGTTCTTTGAAATTGCTGAAAACAAGGAGGATTACAATAAATTCTACGAGGCATTTTCAAAGAACCTTAAGCTTGGGATTCACGAGGATAGCCAGAACAGATCCAAGATTGCTGACTTGCTCAGGTACCACTCTACTAAGAGTGGAGATGAGATGACCAGCTTGAAGGATTATGTGACGAGAATGAAGGAGGGTCAAAAGGATATCTATTACATAACTGGTGAAAGCAAGAAGGCTGTTGAGAACTCTCCATTCTTGGAGCGTCTGAAGAAGAAGGGTTATGAGGTTCTTTTCATGGTTGACGCTATTGATGAATATGCCATTGGGCAATTGAAGGAATACGAAGGGAAAAAATTGGTGTCTGCCACAAAGGAGGGGTTGAAATTAGAGGAAAGTGAAGATGAGAAGAAGAAAAAGGAAGAGTTGAAGTCCCTATTTGATGGTCTCTGCAAAGTTATCAAGGATATTCTCGGGGACAAGGTGGAGAAAGTTGTTGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACTGCTAACATGGAAAGAATCATGAAGGCCCAGGCTTTGAGAGACAGTAGCATGTCAAGCTACATGTCAAGCAAGAAGACCATGGAAATTAATCCCGAGAATCCTATCATGGATGAGCTTAGAAAGAGGGCTGAAGCAGACAAAAATGACAAATCTGTCAAGGATTTAGTTCTATTGATGTACGAAACTGCTTTGTTGACATCAGGGTTTAGCCTTGATGATCCTAATACTTTTGGTAACAGGATTCACAGGATGATGAAGCTGGGTTTAAGTATTGATGAGGATGAAAGTCTTCCTGACACCGATGCTGAAATGCCTCCTCTTGAAGAGGCTGCTGATGCAGAGGGCAGCAAGATGGAGGAGGTGGATTAATTCAATGTTTATTAGCTTTGTTAGATAGTTACATTGGATCAGATTTGTAGTGGTAATTTCGGTATTTTTCCGAGC

Ace file of the UniGene sp_v2.0_unigene15558 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	molecular chaperone Hsp90-2 [Nicotiana benthamiana]	-	-	80%
FL-Next	sp=Heat shock protein 81-1; Oryza sativa subsp. japonica (Rice).	-	-	89%
Blast2go	heat shock protein 90-2	-	-	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	0.0	-
Sma3	Heat shock protein Hsp90	IPR001404	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q0J4P2

Fln msg:

Fln protein: MAEAGEVETFAFQAEINQLLSLIINTFYSNKEIFLREIISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEVSDDEEEEGKEKKEEEGTVEEVDEEKEKEE*KKKKIKEVSHEWSLVNKQKPIWMRKPEDITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAIGQLKEYEGKKLVSATKEGLKLEESEDEKKKKEELKSLFDGLCKVIKDILGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENPIMDELRKRAEADKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESLPDTDAEMPPLEEAADAEGSKMEEVD*

Protein Length: 707

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTGTAAATTCTTCGCTCCGAATCCATCTTTTTGCGACAAGGGTTTCGTTTCGGCGTTTTTCTCGTCTGTAACTTCTTCGCTCCGTATCCATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGTGTTTTTCTCGTCTGTGTTTTCGTTAAGCTTTCGAGGAGAAATC_-_ATGGCGGAAGCTGGTGAAGTTGAGACCTTTGCCTTCCAGGCTGAGATCAACCAGCTTTTGAGTCTTATTATCAACACTTTTTACAGCAACAAGGAAATTTTTCTTAGAGAGATCATCAGCAATTCCTCAGATGCTTTGGACAAGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGCTGGATGCACAACCGGAACTGTTTATTCACATTATTCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAGTTTATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTGGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGGTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTATTAAGAAGCATTCAGAGTTCATCAGCTATCCTATATCTCTCTGGACTGAGAAGACTACAGAGAAGGAAGTTTCAGATGATGAGGAGGAGGAGGGAAAGGAAAAGAAAGAGGAAGAAGGCACTGTTGAGGAAGTGGATGAAGAAAAGGAGAAGGAAgAGtAGAAGAAGAAGAAAATCAAGGAAGTTTCACATGAATGGAGTCTTGTGAACAAACAGAAGCCTATCTGGATGAGAAAACCAGAGGATATTACGAAGGAAGAATATGCGGCATTTTACAAGAGTCTGACAAATGACTGGGAAGAACACTTGGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCACCGTTTGATCTCTTCGATACCAAGAAGAAGTTAAATAACATCAAGCTCTATGTCAGGCGTGTATTCATCATGGACAACTGTGAAGAGTTGATCCCGGAATACCTTAGCTTTGTAAAGGGTGTCGTGGACTCTGAAGACCTTCCTTTGAATATTTCTCGCGAGACTCTCCAACAAAACAAAATATTAAAAGTTATTAGGAAGAATCTTGTCAAGAAGTGTGTAGAGTTGTTCTTTGAAATTGCTGAAAACAAGGAGGATTACAATAAATTCTACGAGGCATTTTCAAAGAACCTTAAGCTTGGGATTCACGAGGATAGCCAGAACAGATCCAAGATTGCTGACTTGCTCAGGTACCACTCTACTAAGAGTGGAGATGAGATGACCAGCTTGAAGGATTATGTGACGAGAATGAAGGAGGGTCAAAAGGATATCTATTACATAACTGGTGAAAGCAAGAAGGCTGTTGAGAACTCTCCATTCTTGGAGCGTCTGAAGAAGAAGGGTTATGAGGTTCTTTTCATGGTTGACGCTATTGATGAATATGCCATTGGGCAATTGAAGGAATACGAAGGGAAAAAATTGGTGTCTGCCACAAAGGAGGGGTTGAAATTAGAGGAAAGTGAAGATGAGAAGAAGAAAAAGGAAGAGTTGAAGTCCCTATTTGATGGTCTCTGCAAAGTTATCAAGGATATTCTCGGGGACAAGGTGGAGAAAGTTGTTGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACTGCTAACATGGAAAGAATCATGAAGGCCCAGGCTTTGAGAGACAGTAGCATGTCAAGCTACATGTCAAGCAAGAAGACCATGGAAATTAATCCCGAGAATCCTATCATGGATGAGCTTAGAAAGAGGGCTGAAGCAGACAAAAATGACAAATCTGTCAAGGATTTAGTTCTATTGATGTACGAAACTGCTTTGTTGACATCAGGGTTTAGCCTTGATGATCCTAATACTTTTGGTAACAGGATTCACAGGATGATGAAGCTGGGTTTAAGTATTGATGAGGATGAAAGTCTTCCTGACACCGATGCTGAAATGCCTCCTCTTGAAGAGGCTGCTGATGCAGAGGGCAGCAAGATGGAGGAGGTGGATTAA___TTCAATGTTTATTAGCTTTGTTAGATAGTTACATTGGATCAGATTTGTAGTGGTAATTTCGGTATTTTTCCGAGC

Fln Alignment:

Contig15558___AGEVETFAFQAEINQLLSLIINTFYSNKEIFLREIISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVSHEWSLVNKQKPIWMRKPEDITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAIGQLKEYEGKKLVSATXXXXXXXXXXXXXXXXXXXXXLFDGLCKVIKDILGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDXXXXXXXXSKKTMEINPENPIMDELRKRAEADKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESLPDTDAEMPPLEEAADAEGSKMEEVD
Q0J4P2_______________ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKITLYLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKE-VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNRNKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEDET-AEADTDMPPLED--DAGESKMEEVD

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
1042			2	97	0.921055
1046	96	3			0.99989
1048	97		2		0.933298
1049	1	3		93	0.980329
1052	2			97	0.938918
1056	3			96	0.999923
1057		3		96	0.999923
1060		2		97	0.946738
1068		97	2		0.958202
1091		2	97		0.964186
1092	2		97		0.964186
1095		2		97	0.966038
1113		97		2	0.975753
1114			2	97	0.975753
1115	2			97	0.975753
1116			2	97	0.97849
1117	97			2	0.97849
1118		97	2		0.97849
1131			1	95	0.904136
1132		3		96	0.98536
1133		96	3		0.986325
1198	93	2	4		0.983471
1201	6			93	0.999999
1202			4	95	0.996599
1207	4			95	0.997218
1208	4			95	0.997494
1212	92	4			0.98868
1213	4	2		92	0.98868
1217	95	4			0.997494
1298	15	84			0.999986
1355		12		87	0.992554
1357	12		87		0.992554
1368		14		85	0.993533
1369		14	85		0.993533
1370	14		85		0.993533
1984	36		63		1.0
2039	36		63		1.0
2195	11	88			0.923564
2282		6	13	80	0.999961
2298		10		90	0.90298
2324	83		16		0.994512
2327	16	83			0.994512
2328		83	16		0.994512
2329		16		83	0.994512
2330		16		83	0.994512
2331	16		83		0.994512
2332	16			83	0.994512
2333		83	16		0.994512
2336		83		16	0.994512
2338	75	25			0.996473
2339	75		25		0.996473
2341	75	25			0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
1430	1442	TTC TTC TTC TTC T	13
1509	1521	CCT CCT CCT CCT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain