SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15447

Length: 1090 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15447

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tau class glutathione S-transferase n=3 Tax=Pinus RepID=Q4PNY9_PINTB	-	-	77%
FL-Next	tr=Tau class glutathione S-transferase; Pinus densata.	-	-	83%
Blast2go	tau class glutathione s-transferase	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, omega-class	IPR005442	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q4PNZ0

Fln msg:

Fln protein: MASEGEKGQVKLLGVTLSPFVVRVCIALALKGIDYEFIQEHFLHPKSELLLKSNPVHKKVPVLIHNGKPICESMIIVQYIEEAWGNKGPNLMPKDPYERAIARFWAAFVDDKLFPSMQAALLGQGGQLQKAVEESVTNFLLIEEALRTNHCFAGKVYFGGDEIGLIDIALGGLSAFIKGVEKATESVLIDPEKMPLLSAWMDRFCKIDVVKEVMPDPAEYIYLLGEPG*

Protein Length: 230

Fln nts: ATGGGGATATCCGAGATAGAAGAGGAAGACACATAAAACTCCAAATATATTTTCAGAGAA_-_ATGGCTTCGGAGGGGGAAAAGGGGCAAGTAAAGCTGCTAGGTGTGACTCTGAGTCCCTTCGTGGTGCGGGTATGCATTGCTCTGGCTCTTAAAGGTATCGATTACGAGTTCATCCAAGAGCATTTCCTGCACCCTAAGAGCGAGCTGCTGCTGAAATCAAACCCTGTTCACAAGAAAGTTCCAGTTCTTATCCACAATGGAAAGCCTATTTGTGAATCCATGATTATTGTGCAATACATAGAGGAGGCATGGGGAAACAAGGGACCAAATCTTATGCCGAAGGATCCATATGAGCGAGCCATTGCTCGCTTTTGGGCTGCCTTTGTAGACGATAAGCTCTTCCCATCTATGCAAGCAGCTCTCCTTGGCCAAGGCGGGCAGCTACAGAAAGCAGTGGAAGAGAGCGTTACCAACTTTCTTTTGATAGAGGAAGCTCTGCGAACCAACCACTGCTTCGCCGGAAAAGTGTATTTTGGAGGGGATGAGATCGGCTTGATTGACATCGCATTGGGTGGTTTGTCGGCGTTTATTAAAGGCGTCGAGAAGGCTACCGAGAGCGTTTTAATAGATCCAGAGAAAATGCCGTTGTTGAGCGCATGGATGGATCGATTCTGTAAAATCGATGTAGTGAAAGAAGTGATGCCAGATCCGGCGGAATATATATATCTGTTAGGAGAGCCAGGATGA___TTTCACCACCTACTGCTAATTAGGGCAAACCATGCCGGTCTTATACGCTGAGGACAGACAGAAAGATTATATTTAAGATGAGTGTTATTCATAGTCAGTGTCTTTTTGTTCAGCTGGTCTTGAAGTATAGCTGTTTTATGTTAATTAGTGTGAATAATGCTTTGGCGAATCTCGCCGGTACTATATCTAGCATTCCTCTGTTCAATGTACATTATTTAATCGCAACAAGTTTTTGCTGGATCTCTCCGATACTGTCGCTGGTATCGCCCTGTTCAATATGTGTTGATTACGAATGTAATAGAAGATAATGAAGAATGTAACAAGTACATTATTTAGAATGAAA

Fln Alignment:

Contig15447___MASEGEKGQVKLLGVTLSPFVVRVCIALALKGIDYEFIQEHFLHPKSELLLKSNPVHKKVPVLIHNGKPICESMIIVQYIEEAWGNKGPNLMPKDPYERAIARFWAAFVDDKLFPSMXXXXXXXXXXXXXXVEESVTNFLLIEEALRTNHCFAGKVYFGGDEIGLIDIALGGLSAFIKGVEKATESVLIDPEKMPLLSAWMDRFCKIDVVKEVMPDP---AEYI
Q4PNZ0_______________MAREGERGQVKLLGATLSPFVVRVRIALALKGIDYEFIQED-LKTKSELLLQSNPVYKQIPVLVHNGKPVCESMIIVQYIEEAWDNKAPNLMPKDPYDRAIARFWAAFIDDKLFPYLRAALFGQGEQLQKAVEDSVTNFLLIEEALRTNRCFAGKAYFGGDEIGLIDIALGGMSTFIKAVEKATDSVLIDPEKMPLLTAWMDRFCKSDGVKEVMPDPVKHAEYL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
711	14	85			0.999981
712		85		14	0.999981
716			84	15	0.999986
795	18	81			0.999994
834		18		81	0.999994
857	10		90		0.90298
863		50		50	1.0
899			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain