SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15418

Length: 1224 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15418 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L7a n=11 Tax=Poaceae RepID=RL7A_ORYSJ	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	60s ribosomal protein l7a	-	-	93%

Source	InterPros	Term	Type	Identity
Sma3	Sulfotransferase domain	IPR000863	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ribosomal protein L7A/L8	IPR001921	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Ribosomal protein L7Ae conserved site	IPR004037	-	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	-
Sma3		IPR005132	-	-
Sma3	Peptidase C50, separase	IPR005314	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Mo25-like	IPR013878	-	-
Sma3		IPR014734	-	-
Sma3	Ribosomal protein L7Ae/L8/Nhp2 family	IPR018492	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7T8

Fln msg: Overlapping hits, possible frame ERROR between 669 and 663, your sequence is longer than subject: 341 - 258

Fln protein: MAPKRGVKVPAAAKKKVPKVVNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRVLKQRLKVPPALNQFTKTLDKNLAANLFKMLLKYRPEDKAAKKERLLKKAQAEAEGKTVEVKKPIVVKYGINHVTYLIEQSKAQLVVIAHDVDPIELIVWLPALCRKMNIPYAIVKGKARLGAIVxxxxATALCLTSVKNEDKMEFSKIVEAVKANFNDKFDEYRRQWGVALWEPNRRQKQRPRKNLWPRKQHRGSLKNNSSEYFSHFQIFIGLSFAVCCNLIYRYSNISKFCTKEFSKPILTQGSENMSILQLDKLLSKQYFIHIHWPYAFSTTFCML*

Protein Length: 342

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGATTGACGTGCGCGTGGAAGGAGGTGCCGGGTCAGTTAGCAGAGTGAGGCAGAGAGGCGGAGCATATCGATTCCAGCA_-_ATGGCTCCGAAGAGAGGGGTTAAGGTTCCAGCCGCTGCGAAGAAGAAGGTCCCGAAGGTTGTTAATCCATTGTTTGAAAAGCGGCCCAAGCAGTTTGGGATTGGGGGAGCTCTGCCGCCAAAGAAGGATTTGCACAGATTCGTGAAATGGCCGAAGGTCGTACGCATCCAGAGGCAGCGGAGGGTATTGAAGCAGCGTTTGAAGGTTCCTCCGGCCTTAAACCAGTTCACCAAGACGCTTGACAAGAATCTCGCTGCCAACCTTTTCAAGATGCTTCTAAAATATAGGCCGGAAGATAAAGCTGCAAAGAAGGAAAGGCTTCTGAAAAAAGCTCAGGCTGAGGCAGAAGGGAAGACCGTTGAAGTGAAGAAGCCTATTGTTGTGAAATATGGAATTAATCATGTAACTTACCTAATTGAGCAGAGTAAAGCTCAATTGGTAGTCATTGCACATGATGTTGATCCAATTGAGTTGATTGTGTGGCTTCCTGCACTTTGTAGAAAAATGAACATCCCTTATGCAATTGTCAAGGGGAAAGCACGTCTTGGAGCGATCGTGxxxxxxxxxxxxGCAACAGCCTTGTGTTTGACTTCTGTAAAGAACGAGGACAAGATGGAATTTAGCAAGATTGTCGAGGCAGTAAAGGCTAACTTCAATGACAAATTTGATGAGTATCGGCGACAATGGGGAGTGGCATTATGGGAACCAAATCGCAGGCAAAAACAAAGGCCAAGGAAAAACTTGTGGCCAAGGAAGCAGCACAGAGGCTCACTTAAGAATAATTCCTCGGAATATTTTTCCCATTTTCAAATTTTTATTGGATTGTCTTTTGCAGTTTGTTGTAATTTGATTTACAGGTATAGTAACATATCAAAGTTTTGTACTAAGGAATTCTCTAAGCCAATTTTAACTCAAGGCTCAGAAAACATGTCAATTTTGCAACTGGATAAATTGTTGAGTAAACAATATTTCATACACATTCATTGGCCTTACGCATTCTCTACAACATTTTGTATGCTGTGA___TGATGATATCTTCATTTTGTCCTTCTGTATGTTAGTGTTGTTGATATTTAATGCTATATACTTTTAAGCATGTACGGTGTTTACATGTACATGTAGCTAT

Fln Alignment:

Contig15418___MAPKRGXXXXXXXXXXXXXXVNPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXVPPALNQFTKTLDKNLAANLFKMLLKYRPXXXXXXXXXXXXXXXXXXEGKTVEVKKPIVVKYGINHVTYLIEQSKAQLVVIAHDVDPIELIVWLPALCRKMNIPYAIVKGKARLGAIVHxxTATALCLTSVKNEDKMEFSKIVEAVKANFNDKFDEYRRQWGVALWEPNRRQKQRPRKNL
D5A7T8_______________MAPKRGVKAPVAAKKKVPKVVNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRVLKQRLKVPPALNQFTKTLDKNLAANLFKMLLKYRPEDKAAKKERLLKKAQAEAEGKTVEVKKPIVVKYGINHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMNIPYAIVKGKARLGAIVHxxTATALCLTSVKNEDKMEFSKIVEAIKGNFNDKFDEYRRQWGGGIMGTKSQAKTKAKEKV

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
536		20		80	0.995493
936		96		3	1.0
1043			89	10	1.0
1079		2		97	0.958202
1094		97		2	0.966038
1172		97	2		0.966038
1173		97		2	0.966038
1175	2		93	3	0.998974
1178	93	1		4	0.999182
1179	4	93	1	1	0.999271
1180		91	4	2	0.998238
1181	4	1	1	92	0.999549
1182	10	86			1.0
1183		95	4		0.999984
1184	7		2	89	1.0
1185	1		7	90	1.0
1186	4	93		1	0.99996
1187		95		1	0.918242
1189	7	89			1.0
1190	3		96		0.991164
1191		92	7		1.0
1192		1	90	7	1.0
1196		4	95		0.995055
1197	8	2		87	1.0
1199	75	15	8		1.0
1202	11	46			1.0
1203	8	62		25	1.0
1204		60	26	13	1.0
1205	21	65	13		1.0
1206	78		21		1.0
1208	11		88		0.923564
1209	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain