SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15322

Length: 1573 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15322 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-D-glucuronate carboxy-lyase n=3 Tax=rosids RepID=B3VDY9_EUCGR	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	udp-xyl synthase 5	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	0.0	92%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUD0

Fln msg:

Fln protein: MASVSSNGGGTVTSQTITRPPPTPSPLRYSKFSQAKLRILVTGGAGFIGSHLVDRLMETGKNEVIVVDNFFTGSKDNIRRWIGHPNFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQKEEYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPMTVQAPGTQTRSFCYVSDMVDGLIRLMEGDNTGPINLGNPGEFTMLELAEAVKELIETSTTVEMVENTPDDPRKRKPDITKATTLLGWEPKVTLREGLPLMAEDFRERLGVSKK*

Protein Length: 351

Fln nts: CAATTGCACGCTATAACGGTAGGTCGGGGTGCATGCCAGCAGGAGTATCGTCGATTTTCGTAAGGTAATACGTCCGCATTCCCAAAAGGGTCGTTTGCGTAGAAGTAAGTCATTGGTAGTTGGCAGGTTTGGAACCCGCGATCTGTGCTTGCCCTGGTTCGAATACCGGGATCGCAAAGAAAGGCATCTCGATTCGCCTATTTAAGGCCTTATAACCTTTTAAGGTGCATCCTTGCCATCGGAAGAGGAAACACGCGCGTTTACTGTTCGATCGGCCGTCTAAATTTGCCGGTCAAAAAGCATTGAAATA_-_ATGGCGTCGGTTTCTTCTAATGGGGGTGGAACTGTCACTTCCCAGACAATCACGAGGCCTCCTCCAACTCCCTCTCCATTACGTTACTCTAAGTTCTCTCAGGCAAAGCTGCGAATATTGGTGACAGGAGGTGCTGGCTTCATTGGATCTCATTTAGTAGACCGGTTGATGGAAACTGGTAAAAATGAGGTAATTGTAGTTGATAACTTCTTTACTGGTTCAAAGGATAATATTAGGAGATGGATCGGACATCCAAATTTTGAGCTTATTAGACATGATGTGACAGAGCCTTTACTGATAGAAGTTGATCAAATATATCATCTAGCATGCCCAGCATCTCCAATATTCTACAAGTACAATCCTGTCAAGACGATAAAGACCAATGTTATAGGTACATTGAACATGTTAGGACTTGCTAAGAGAGTTGGAGCAAGGATTCTACTAACATCAACATCTGAAGTATATGGTGATCCTCTGGAACATCCTCAAAAGGAAGAATACTGGGGCAATGTCAACCCAATTGGTGTAAGAAGCTGTTATGATGAGGGGAAGCGTGTTGCAGAGACTCTAATGTTTGACTACCATAGGCAGCATGGGTTAGAAATCCGTATTGCTCGAATATTTAATACCTATGGGCCACGAATGAACATTGACGATGGCCGTGTTGTCAGCAATTTTATTGCTCAGGCCCTCAGAGGTGAACCAATGACTGTCCAAGCCCCAGGAACACAAACCCGAAGCTTCTGCTATGTTTCTGATATGGTTGATGGTTTAATTCGGCTAATGGAAGGAGATAATACTGGGCCTATCAATCTTGGAAATCCAGGAGAGTTTACAATGCTGGAACTTGCTGAAGCTGTGAAGGAGCTTATTGAAACGTCAACAACTGTAGAGATGGTTGAAAACACTCCAGATGATCCACGCAAGAGGAAACCAGACATCACAAAGGCAACAACACTTCTTGGATGGGAGCCTAAGGTTACTTTGCGGGAAGGGCTACCACTTATGGCAGAAGACTTCCGTGAGCGGTTGGGAGTTTCTAAAAAGTGA___TTTTTCTAGAAGTCCAAAGTACAGCCGATACAAAGGAAATCTTTTTTGTTCCCATAGAGCAAAATTGTTTCTCAAAACTAGCAAAGAGGTCATGCTAATGGCAGTTTTGGACTTGAATTGAATGCTCCATTTTTTAGTCTTCTGTAGTTTGTTCCTAGCCACGTGCTTTGAAATTTCTTGAACAAACAATAAAGTCATTTCTTTCAAATTAAC

Fln Alignment:

Contig15322___QTITRPPPTPSPLRYSKFSQAKLRILVTGGAGFIGSHLVDRLMETGKNEVIVVDNFFTGSKDNIRRWIGHPNFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQKEEYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPMTVQAPGTQTRSFCYVSDMVDGLIRLMEGDNTGPINLGNPGEFTMLELAEAVKELIETSTTVEMVENTPDDPRKRKPDITKATTLLGWEPKVTLREGLPLMAEDFRERL
A9NUD0_______________QAVPRPPPTPSPLRYSKFSQAKLRILVTGGAGFIGSHLVDRLMESGNNEVIVADNFFTGSKDNLRKWIGHPNFELIRHDVTETLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQKEEYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEELTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINLGNPGEFTMLELAEAVKELIEPSAQLKITENTPDDPRMRKPDITKAKTLLGWEPKVSLREGLPRMAEDFRLRL

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
170	60			40	1.0
295	6	93			0.999153
298			5	95	0.997749
305	95	5			0.997749
321		5		94	0.998397
359		2	5	89	0.979359
361			5	94	0.998397
369			5	94	0.998397
370		91	8		1.0
373		5		94	0.998578
445			6	93	0.999453
457	92		8		0.999718
458		8	92		0.999718
459			91	8	0.999766
460		87	12		1.0
461	12	87			1.0
462	8	91			0.999766
465		12		87	1.0
467	12	8		79	1.0
468			20	79	1.0
469	87		12		1.0
472			8	79	1.0
473	13	86			1.0
475			14	85	1.0
476	14			85	1.0
478		85	15		1.0
485		84		15	0.999986
489			20	80	0.999996
490		20	10	70	0.999998
778	90		9		1.0
937			9	90	0.999842
938		9	90		0.999842
940	9			90	0.999842
943	90		9		0.999842
945		8	92		0.999718
947		8		92	0.999718
949		8		92	0.999718
950	92		8		0.999718
1283		90		9	0.999842
1292		10		90	0.999898
1340	92	8			0.999718
1342	37	4	58		1.0
1347		90		9	0.999872
1348	71	14	9		1.0
1349	9	90			0.999872
1350		80	4		1.0
1351	15		10	75	1.0
1353	88		11		0.999952
1355	82	17			1.0
1358		9	90		0.999842
1360		18		81	1.0
1367		91		8	0.999807
1369	8			91	0.999807
1370		8		91	0.999807
1371	91		8		0.999807
1373	26	8	65		1.0
1374			8	91	0.999807
1463		20	80		1.0
1464	80	13			0.999961
1466		13		80	0.999961
1468	15	84			0.999986
1490			11	88	0.923564
1527	25			75	1.0
1554	83	16			0.994512
1557		16	83		0.994512
1558	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain