SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15309

Length: 1411 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15309 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9T0

Fln msg: W2: There is no M at the beginning,

Fln protein: QQASRVLRNGVASRLKTNYGKRFKHCPCVVGSIVVLCSLIVGSQCAAFNDFFYPSWALDHVMYEGELLKLKLDNTSGAGFASKSTYIFGKVNVQIKLVPGDSAGTVTAFYMSSQGDKHDEFDFEFLGNTSGQPYTVQTNVYSKGNGNREQRMFLWFDPTADFHSYSFLWNRHQVVFFVDDVPVRVFGNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWNHAPFISTYKNFSIDACEYSSKTSCSSWWDEPAYASLDAKQRLKLKWVQEKYMTYDYCKDSVRFATPPPECA*

Protein Length: 299

Fln nts: ACAACAGGCCAGTCGAGTCTTGAGGAATGGCGTTGCAAGCAGGTTGAAAACCAATTACGGAAAGCGTTTCAAGCACTGCCCGTGTGTTGTTGGTAGTATTGTAGTGTTGTGCAGCCTGATAGTGGGCTCTCAATGTGCAGCCTTCAATGATTTCTTCTATCCCAGTTGGGCTCTTGACCATGTTATGTACGAAGGGGAGTTGCTCAAACTTAAGCTCGACAACACTTCTGGTGCAGGGTTTGCCTCCAAGAGCACATACATCTTCGGAAAAGTGAATGTGCAGATTAAGCTCGTTCCTGGCGACTCTGCTGGCACCGTTACTGCTTTCTATATGTCTTCCCAAGGGGATAAGCACGATGAATTTGATTTTGAATTCTTGGGGAACACTTCTGGACAGCCATACACTGTGCAGACCAATGTTTATTCAAAAGGGAATGGCAATAGGGAGCAGCGTATGTTCTTATGGTTCGACCCAACCGCGGATTTCCATTCCTACTCCTTTCTCTGGAATCGCCACCAAGTTGTTTTCTTTGTGGACGATGTGCCGGTTCGGGTATTTGGGAACAATGAGAAAGTAGGAGTCCCTTATCCTCAAACTCAACCCATGGGCGTCTACTCGTCAATATGGAACGCAGACGACTGGGCTACTCAAGGTGGCCTCGTCAAGACCGATTGGAACCACGCGCCTTTCATTTCCACGTACAAAAATTTCAGCATCGATGCATGCGAGTATTCCTCGAAAACGAGCTGCTCTTCGTGGTGGGATGAGCCTGCTTACGCTTCTCTTGATGCAAAGCAGAGGCTGAAACTGAAATGGGTACAAGAGAAATACATGACTTACGATTACTGCAAAGATTCAGTCAGATTTGCCACACCTCCACCAGAGTGTGCATGA___ATTGGCGTTTCCGAACTCCCTCTAATATTCCTTGAGAATGACAATTGTTACCCATTCCTGTCAGCGTGGATAGTGGATGGAAATCCCTTAATTGCAGTGGGAGATTCATTCTTTCTGGAGATCGTGATCGTGATCGTGATCGTGATGTCCGTTTTTTACCAGCATCCTGCACTTAGTTACAGCAGAATATATCCCCATTCTTCCGATAGAAATATTTACAAATCCCGAAAGCTTCTCGTGCTTGAAAGCGTGCGACGTATTCTGCTTGTAAAACAAAAACATTGAAATCCTGTGACGTATTTCGGCTTTGAAATTATAAATATTGTGTCTTATTTTGGGTTCGAAATTAACACCATAAAATTTCATTTATTTATTCGTACAAAATAAAATTTCATGATTACATATTGCAAACATCTACTTCAGCAGAGACTCTGGATCTCTCAGCGCGTGCATTGACGTACAAGTACTCGCGCCTTCCAGGGCAGAATATGAAGAGATACCAATAGAAATGGTTAC

Fln Alignment:

Contig15309___GKRFKHCPCVVGSIVVLCSLIVGSQCAAFNDFFYPSWALDHVMYEGELLKLKLDNTSGAGFASKSTYIFGKVNVQIKLVPGDSAGTVTAFYMSSQGDKHDEFDFEFLGNTSGQPYTVQTNVYSKGNGNREQRMFLWFDPTADFHSYSFLWNRHQXXXXXXXXXXXXFGNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWNHAPFISTYKNFSIDACEYSSKTSCSSWWDEPAYASLDAKQRLKLKWVQEKYMTYDYCKDSVRFATPPPECA
D5A9T0_______________GGRIMHWPCVLSSIVMLCSLVVGSQCAAFNDFFYPSWALDHVMYEGELLKLRLDNTSGAGFASKSTYIFGKVNVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVFSKGVGKREQRIFLWFDPTADFHSYSFLWNRQQVVFFVDDVPIRVFLNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYKNFSIDACEYPSTTSCSSWWDQPAYASLDAKQRLKLKWVQEKYMTYDYCRDSGRFATPPAECA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
844	90		10		0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
371	397	ATCACG ATCACG ATCACG ATCACG ATC	27

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain