SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15294

Length: 1239 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15294

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rac-like GTP-binding protein 3 n=4 Tax=BEP clade RepID=RAC3_ORYSJ	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	rho family gtpase	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTPase superfamily, Rho type	IPR003578	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN97

Fln msg:

Fln protein: MSCSRFIKCVTVGDGAVGKTCMLICYTTNKFPTDYVPTVFDNFSVNVLVGGSTINLGLWDTAGQEDYNRLRPLSYRGTDVFILAFSLISQASYENVSKKWMPELRHYAPGVPVVLVGTKLDLREDKRYLADNLGTTPITTAQGEELRKQVGAAAYIECSSKTQQNVKAVFDLAIKVVMQPPVLKEKKKKKRKYHKACAIL*

Protein Length: 202

Fln nts: AACGTTTGTGACATGCATTTATCTTCCAATCCCCTTGGTAGAGCTTCTCAGTTGAAATCTCAGTATATCTGAAAACTACCTCAGTTAGACCCAAAGATTTAAATGCTTCAAACTGATTTAGCTGATTGTGCATTCCTGAAATCTGCCTAAATCACACACAATGTATGGGATTTGAATCTCAGAAGATTGTTATGTATATATACATTTGGCGCGGTCCTTTCTTTTAATGCTGGCATTGTTTATTTACAGAAATACATTTTGCAGCCATTCTTCAGTAAAACGTTGGGTATTCTTGAACTTTGGTATATGAGGACAGAAGGGCTTTAGAATTTCAGGGTTTAGCCTTGAGATACTATTGACTTCAGTTCAGCTTTTCGGCCATTGAGACAGAGATGAGAGTTTTCCCTGTTTAGAAGGAAGGAGGATCAGAATTCAAAGGTTTTCTAGTCTGGAGTTTTGTAATTTTTTGCTGCA_-_ATGAGTTGTTCGAGGTTTATAAAATGTGTTACTGTTGGCGATGGAGCTGTTGGAAAGACTTGCATGTTGATTTGCTATACAACCAATAAGTTCCCCACTGATTATGTACCCACTGTGTTTGATAATTTCAGCGTCAACGTGCTTGTTGGTGGCTCAACTATAAATCTAGGTCTTTGGGACACTGCAGGTCAAGAAGACTATAATAGATTGAGGCCTCTTAGTTACCGCGGCACTGATGTATTTATCTTGGCATTTTCCTTGATCAGCCAGGCTAGCTATGAAAACGTCTCCAAGAAGTGGATGCCCGAGCTTAGACATTATGCTCCTGGAGTTCCAGTTGTTCTAGTTGGAACAAAATTAGATCTTCGTGAAGATAAGCGTTATTTGGCCGACAATCTGGGTACTACACCAATAACAACTGCACAGGGTGAGGAGTTGAGGAAACAGGTCGGTGCTGCTGCATACATAGAGTGCAGCTCAAAGACTCAACAGAATGTTAAAGCCGTGTTTGATTTGGCCATCAAAGTTGTCATGCAGCCACCAGTTCTCAAGGAAAAAAAGAAAAAGAAGAGAAAGTACCACAAGGCTTGTGCAATTTTATGA___CTGTAGTGTTTGACTGGTTTGATTCAAGTCAATTTAACCTGACCTAGAGTGACATGCCAAAGGAGCCATATTCTAGAATATATTTCACATTGGTAGGCGAAGATTTCTTAATATTGTATTATATTCATAACTGAAAAACGGTTAAGAGGTTGACATTCCAAG

Fln Alignment:

Contig15294___MSCSRFIKCVTVGDGAVGKTCMLICYTTNKFPTDYVPTVFDNFSVNVLVGGSTINLGLWDTAGQEDYNRLRPLSYRGTDVFILAFSLISQASYENVSKKWMPELRHYAPGVPVVLVGTKLDLREDKRYLADNLGTTPITTAQGEELRKQVGAAAYIECSSKTQQNVKAVFDLAIKVVMQPP
A9NN97_______________MSTSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGTSVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRASYENVSKKWIPELRHYAPGVPIILVGTKLDLREDKQFYADHPGALPVTTDQGEELRKQIGAAVYIECSSKTQQNIKAVFDAAIKVVIQPP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1045	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain